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mmu_circAsh1l_369
Basic information of circular RNA
PanCircBase ID:
mmu_circAsh1l_369
mm39_Chr. Position ID:
chr3|88959295|88960478|+
Gene name:
Ash1l
Transcript:
ENSMUST00000186583.7
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
13,14,15
Exon/intron offsets:
0,754,1088
Genomic length:
1183
Exon/intron sizes in nt:
109,165,95
Flanking exon/introns:
chr3:88950950-88959295|chr3:88960478-88961669
Splice length:
369
Other database IDs:
CIRCpedia: MMU_CIRCpedia_228849, circAtlas: mmu-Ash1l_0030
circBase: hsa_circ_0014572, circAtlas: hsa-ASH1L_0073, CIRCpedia: HSA_CIRCpedia_28170
Human Ortholog IDs:
Mature spliced Sequence:
GTCTGTTAATGGAGTGTACCGTATTGGACTGTATGCACTTAAGGATATGCCAGCTGGGACAGAGCTTACCTATGATTACAACTTTCATTCCTTCAATGTAGAAAAACAGCAACTTTGTAAATGTGGTTTTGAGAAGTGTCGAGGAATCATTGGAGGCAAGAGTCAACGGATGAACGGACTCCCTAGCCATAAAGGTAGCCAGTCTTCAAGCACGCATAGAAAGTCTGCACGGGCGAAAGAGAAGCGGAAGTCCAAGCACAAGCTGAAGAAAAGGAAAGGCCATCCCTCTGAAGAGCCCAGTGAAAACATCAACACCCCAACAAGATTGACTCCACAGTTACAGATGAAGCCAATGTCCAACAGAGAGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATCCCTCTGAAGAGCCCAGT
59.96
GTAAGCTCTGTCCCAGCTGG
60.11
157
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATCCCTCTGAAGAGCCCAGT
59.96
GGTAAGCTCTGTCCCAGCTG
60.11
158
PCR template sequence:
AAAGGAAAGGCCATCCCTCTGAAGAGCCCAGTGAAAACATCAACACCCCAACAAGATTGACTCCACAGTTACAGATGAAGCCAATGTCCAACAGAGAGAGGTCTGTTAATGGAGTGTACCGTATTGGACTGTATGCACTTAAGGATATGCCAGCTGGGACAGAGCTTACCTATGATTACAACTTTCATTCCTTCAATGTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-382-5p(1), mmu-miR-467b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CCAACAGAGAGAGGTCTGTTAATGGA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCASH1L_369_ORF_1
0.8047
0.196297894
0.882664892
690
ORF sequence:
ATGCCAGCTGGGACAGAGCTTACCTATGATTACAACTTTCATTCCTTCAATGTAGAAAAACAGCAACTTTGTAAATGTGGTTTTGAGAAGTGTCGAGGAATCATTGGAGGCAAGAGTCAACGGATGAACGGACTCCCTAGCCATAAAGGTAGCCAGTCTTCAAGCACGCATAGAAAGTCTGCACGGGCGAAAGAGAAGCGGAAGTCCAAGCACAAGCTGAAGAAAAGGAAAGGCCATCCCTCTGAAGAGCCCAGTGAAAACATCAACACCCCAACAAGATTGACTCCACAGTTACAGATGAAGCCAATGTCCAACAGAGAGAGGTCTGTTAATGGAGTGTACCGTATTGGACTGTATGCACTTAAGGATATGCCAGCTGGGACAGAGCTTACCTATGATTACAACTTTCATTCCTTCAATGTAGAAAAACAGCAACTTTGTAAATGTGGTTTTGAGAAGTGTCGAGGAATCATTGGAGGCAAGAGTCAACGGATGAACGGACTCCCTAGCCATAAAGGTAGCCAGTCTTCAAGCACGCATAGAAAGTCTGCACGGGCGAAAGAGAAGCGGAAGTCCAAGCACAAGCTGAAGAAAAGGAAAGGCCATCCCTCTGAAGAGCCCAGTGAAAACATCAACACCCCAACAAGATTGACTCCACAGTTACAGATGAAGCCAATGTCCAACAGAGAG
Peptide sequence:
MPAGTELTYDYNFHSFNVEKQQLCKCGFEKCRGIIGGKSQRMNGLPSHKGSQSSSTHRKSARAKEKRKSKHKLKKRKGHPSEEPSENINTPTRLTPQLQMKPMSNRERSVNGVYRIGLYALKDMPAGTELTYDYNFHSFNVEKQQLCKCGFEKCRGIIGGKSQRMNGLPSHKGSQSSSTHRKSARAKEKRKSKHKLKKRKGHPSEEPSENINTPTRLTPQLQMKPMSNRE
IRESfinder result
IRESfinder score
0.453937106
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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