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mmu_circAsh1l_1186
Basic information of circular RNA
PanCircBase ID:
mmu_circAsh1l_1186
mm39_Chr. Position ID:
chr3|88942523|88965947|+
Gene name:
Ash1l
Transcript:
ENSMUST00000186583.7
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
9
Exon/intron indexes:
9,10,11,12,13,14,15,16,17
Exon/intron offsets:
0,156,7902,8280,16772,17526,17860,19146,23271
Genomic length:
23424
Exon/intron sizes in nt:
46,10,92,07,14,71,09,10,00,00,00,000
Flanking exon/introns:
chr3:88940639-88942523|chr3:88965947-88970957
Splice length:
1186
Other database IDs:
circAtlas: mmu-Ash1l_0141
Human Ortholog IDs:
Mature spliced Sequence:
CTATACAAAAAGCCAGATGTCCCCCTGTATAAAAAAATCCGTTCAAATGTCTATGTTGATGTCAAACCACTTTCTGGTTATGAGGCTACCACCTGTAATTGTAAGAAGCCAGATGACGACACCAGGAAGGGCTGTGGGGATGACTGCCTAAATAGAATGATCTTTGCTGAGTGTTCCCCTAACACTTGCCCCTGTGGTGAGCAGTGCTGTAACCAGAGGATACAGAGGCATGAGTGGGTGCAGTGTCTGGAACGATTTCGAGCTGAGGAAAAAGGTTGGGGAATTAGAACCAAAGAACCCCTAAAAGCTGGCCAGTTCATCATTGAATACCTAGGGGAAGTTGTCAGCGAACAAGAATTCAGGAACAGGATGATTGAGCAATATCATAATCACAGTGACCACTACTGTTTAAACCTGGATAGCGGAATGGTGATTGACAGTTACCGCATGGGAAATGAGGCCAGATTCATCAACCACAGCTGTGACCCAAATTGTGAAATGCAGAAATGGTCTGTTAATGGAGTGTACCGTATTGGACTGTATGCACTTAAGGATATGCCAGCTGGGACAGAGCTTACCTATGATTACAACTTTCATTCCTTCAATGTAGAAAAACAGCAACTTTGTAAATGTGGTTTTGAGAAGTGTCGAGGAATCATTGGAGGCAAGAGTCAACGGATGAACGGACTCCCTAGCCATAAAGGTAGCCAGTCTTCAAGCACGCATAGAAAGTCTGCACGGGCGAAAGAGAAGCGGAAGTCCAAGCACAAGCTGAAGAAAAGGAAAGGCCATCCCTCTGAAGAGCCCAGTGAAAACATCAACACCCCAACAAGATTGACTCCACAGTTACAGATGAAGCCAATGTCCAACAGAGAGAGGAACTTCGTGCTAAAGCACCATGTGTTCTTGGTGCGAAACTGGGAAAAGATCCATCAGAAGCAGGAGGAGGTGAAGCACACCCGTGACATCCACTCAGCATCGCTGTACACCCGCTGGAACGGCCTCTGTCGGGACGACGGGAACATTAAGTCTGATGTCTTCATGACCCAGTTCTCTGCCCTGCAGACAGCTAGATCTGTTCGAACAAGACGCTTGGCAGCTGCAGAGGAAAACCTGGAAGTGGCTCGGGCAGCGCGCCTAGCACAGATCTTCAAAGAGATCTGTGATGGCATCATCTCCTACAGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAAACCTGGAAGTGGCTCGG
60.54
CAGGTGGTAGCCTCATAACCA
59.16
173
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAAACCTGGAAGTGGCTCGG
60.54
ACAGGTGGTAGCCTCATAACC
59.16
174
PCR template sequence:
AGACGCTTGGCAGCTGCAGAGGAAAACCTGGAAGTGGCTCGGGCAGCGCGCCTAGCACAGATCTTCAAAGAGATCTGTGATGGCATCATCTCCTACAGAGCTATACAAAAAGCCAGATGTCCCCCTGTATAAAAAAATCCGTTCAAATGTCTATGTTGATGTCAAACCACTTTCTGGTTATGAGGCTACCACCTGTAATT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
15
Interacting miRNAs (#binding sites)
mmu-miR-137-3p(1), mmu-miR-9-5p(1), mmu-miR-140-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-375-3p(1), mmu-miR-146a-5p(1), mmu-miR-143-3p(1), mmu-miR-138-5p(1), mmu-miR-199b-3p(1), mmu-miR-218-5p(1), mmu-miR-199a-3p(1), mmu-miR-382-5p(1), mmu-miR-467b-5p(1), mmu-miR-673-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ATCTCCTACAGAGCTATACAAAAAGC
siRNA sets
TTTTGTATAGCTCTGTAGG, TTTTTGTATAGCTCTGTAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCASH1L_1186_ORF_1
0.8359
0.256717616
0.997548035
1206
ORF sequence:
ATGGCATCATCTCCTACAGAGCTATACAAAAAGCCAGATGTCCCCCTGTATAAAAAAATCCGTTCAAATGTCTATGTTGATGTCAAACCACTTTCTGGTTATGAGGCTACCACCTGTAATTGTAAGAAGCCAGATGACGACACCAGGAAGGGCTGTGGGGATGACTGCCTAAATAGAATGATCTTTGCTGAGTGTTCCCCTAACACTTGCCCCTGTGGTGAGCAGTGCTGTAACCAGAGGATACAGAGGCATGAGTGGGTGCAGTGTCTGGAACGATTTCGAGCTGAGGAAAAAGGTTGGGGAATTAGAACCAAAGAACCCCTAAAAGCTGGCCAGTTCATCATTGAATACCTAGGGGAAGTTGTCAGCGAACAAGAATTCAGGAACAGGATGATTGAGCAATATCATAATCACAGTGACCACTACTGTTTAAACCTGGATAGCGGAATGGTGATTGACAGTTACCGCATGGGAAATGAGGCCAGATTCATCAACCACAGCTGTGACCCAAATTGTGAAATGCAGAAATGGTCTGTTAATGGAGTGTACCGTATTGGACTGTATGCACTTAAGGATATGCCAGCTGGGACAGAGCTTACCTATGATTACAACTTTCATTCCTTCAATGTAGAAAAACAGCAACTTTGTAAATGTGGTTTTGAGAAGTGTCGAGGAATCATTGGAGGCAAGAGTCAACGGATGAACGGACTCCCTAGCCATAAAGGTAGCCAGTCTTCAAGCACGCATAGAAAGTCTGCACGGGCGAAAGAGAAGCGGAAGTCCAAGCACAAGCTGAAGAAAAGGAAAGGCCATCCCTCTGAAGAGCCCAGTGAAAACATCAACACCCCAACAAGATTGACTCCACAGTTACAGATGAAGCCAATGTCCAACAGAGAGAGGAACTTCGTGCTAAAGCACCATGTGTTCTTGGTGCGAAACTGGGAAAAGATCCATCAGAAGCAGGAGGAGGTGAAGCACACCCGTGACATCCACTCAGCATCGCTGTACACCCGCTGGAACGGCCTCTGTCGGGACGACGGGAACATTAAGTCTGATGTCTTCATGACCCAGTTCTCTGCCCTGCAGACAGCTAGATCTGTTCGAACAAGACGCTTGGCAGCTGCAGAGGAAAACCTGGAAGTGGCTCGGGCAGCGCGCCTAGCACAGATCTTCAAAGAGATCTGTGATGGCATCATCTCCTACAGA
Peptide sequence:
MASSPTELYKKPDVPLYKKIRSNVYVDVKPLSGYEATTCNCKKPDDDTRKGCGDDCLNRMIFAECSPNTCPCGEQCCNQRIQRHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVSEQEFRNRMIEQYHNHSDHYCLNLDSGMVIDSYRMGNEARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHSFNVEKQQLCKCGFEKCRGIIGGKSQRMNGLPSHKGSQSSSTHRKSARAKEKRKSKHKLKKRKGHPSEEPSENINTPTRLTPQLQMKPMSNRERNFVLKHHVFLVRNWEKIHQKQEEVKHTRDIHSASLYTRWNGLCRDDGNIKSDVFMTQFSALQTARSVRTRRLAAAEENLEVARAARLAQIFKEICDGIISYR
IRESfinder result
IRESfinder score
0.416745957
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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