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mmu_circAscc3_1947
Basic information of circular RNA
PanCircBase ID:
mmu_circAscc3_1947
mm39_Chr. Position ID:
chr10|50480846|50526807|+
Gene name:
Ascc3
Transcript:
ENSMUST00000035606.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
10
Exon/intron indexes:
2,3,4,5,6,7,8,9,10,11
Exon/intron offsets:
0,3169,12961,33157,37772,40192,40912,44358,45042,45796
Genomic length:
45961
Exon/intron sizes in nt:
132,151,560,121,208,142,126,201,141,165
Flanking exon/introns:
chr10:50468993-50480846|chr10:50526807-50535013
Splice length:
1947
Other database IDs:
CIRCpedia: MMU_CIRCpedia_21884, circAtlas: mmu-Ascc3_0038
Human Ortholog IDs:
Mature spliced Sequence:
TTTCGAGTTTCTTATTTCTATGGATCACTGACTGAGTTATAAATGGCTCTACCTCGGCTCACAGGAGCCTTGCGCTCCTTTTCAAATGTCACCAAGCAAGATAATTACAATGAAGAAGTAGCTGACTTGAAGTTGAAGCGATCTAAACTTCATGAACAAGTTTTAGATTTTGGCCTTACATGGAAGAAGATAGTGAAATTTTTGAATGAAAAGCTAGAGAAGAATAAAATGCAAAATATAAATGAAGACTTAAAAGACATACTACAAGCTGCAAAACAAATCGTTGGAACGGATAATGGGAGAGAAGCAATTGAGAGTGGGGCTGCATTTCTCTTTATGACATTTCACATGACGGACTCTGTTGGTTACATGGAGACAAAGGCTATCAGACAGACGTTTGGTCCCTTTCCATCGTCATCTGCTACTTCAGCTTGTAATGCCACTAATCGAATTATTTCTCATTTTAGTCAAGATGATCTCACTGCTTTTGTCCAGATGGCAGAAAACCCATGTAACGATAGAGTGGTTTTTGGCAAAAACTTAGCATTTTCTTTTGACATGTATGATCTGGACCACTTTGATGAATTACCAATAAATGGTGAATCCCAGAAAACTATAAGCTTAGACTACAAGAAGTTCCTGAATGAACAGTTCCAGGAACCCTACACTCCTGAGCTCAAGCCTGTGGAGAAAACAAATGGCTCCCTATTGTGGTGTGAAGTTGAGAAGTACTTAAACGCAACGTTAAAGGAAATGACTGAAGCAGCAAGAGTTGAAGATCTTTGCTGTACTCTATATGACATGCTTGCTTCTGCTAAAAGCGGCGATGAACTTCAGGACGAGCTGTTTGAATTGCTGGGACCTGAAGGACTGGATCTGATTGAGAAGCTGCTCCAGAACAGAATTACAATTGTAGATCGGTTCCTTAATTCCTCGAGCGATCATAAGTTTCAAGTTCTCCAAGATAGTTGTAAAAAGATTTTAGGAGAGAATTCAAAGCCTAATTATGGATGTCAAGTCACTATTCAATCTGAACAAGAAAAACAGTTAATGAAACAATATCGACGTGAAGAAAAAAGAATTGCCAGGCGAGAAAAAAAGGCTGGAGAAGATGGGGAAGTTTCTGGAGAAGGAGTTTTGCCCTTTGATCCTAAGGAACTCCGGATACAGAGAGAACATGCACTTCTGAATGCTAGAAATGCTCCAATTTTAGGAAGACAGAGAGACGTGGAGTTTGAAAAAATCCGTTATCCTCATGTTTATGATTCCCAGGCTCAGGCCCGAGAAACATCAGCATTCATAGCTGGAGCCAAGATGATTTTACCAGAAGGAATCCAGAGAGAGAATACCAAGCTGTATGAGGAAGTCAGGATCCCCTATGGTGAACCAATGCCAGTTGGGTTTGAGGAAAAACCAGTTTATATCAAAGATTTAGATGAGGTTGGACAGTTGGCTTTTAAAGGAATGAAGAGACTCAATAGAATCCAGTCTATAGTATTTGAAACAGCCTACAACACCAACGAAAACATGCTGATCTGTGCCCCTACGGGAGCTGGGAAGACCAATATTGCAATGCTTACTATCTTACATGAAATCCGCCAACACTTTCATCAAGGTGTTATTAAAAAGAATGAGTTTAAGATTGTGTATGTCGCTCCAATGAAAGCCTTGGCAGCTGAGATGACAAATTACTTCAGCAAACGTCTAGAGCCACTGGGCATTGTTGTGAAAGAATTGACTGGAGATATGCAGTTGTCAAAAAGTGAAATTTTACGAACTCAGATGCTGGTGACCACACCAGAAAAATGGGATGTAGTAACAAGAAAGAGTGTTGGGGATGTTGCTCTTTCCCAAATCGTAAAACTCCTGATTCTTGACGAGGTGCACTTGCTGCATGAAGACAGAGGCCCAGTGCTAGAAAGCATAGTCGCCAGGACCTTACGGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCACTTGCTGCATGAAGACA
59.41
TTTGAAAAGGAGCGCAAGGC
59.97
150
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CATGAAGACAGAGGCCCAGT
59.38
TTTGAAAAGGAGCGCAAGGC
59.97
140
PCR template sequence:
TTCCCAAATCGTAAAACTCCTGATTCTTGACGAGGTGCACTTGCTGCATGAAGACAGAGGCCCAGTGCTAGAAAGCATAGTCGCCAGGACCTTACGGCAGTTTCGAGTTTCTTATTTCTATGGATCACTGACTGAGTTATAAATGGCTCTACCTCGGCTCACAGGAGCCTTGCGCTCCTTTTCAAATGTCACCAAGCAAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
12
Interacting miRNAs (#binding sites)
mmu-miR-207(2), mmu-miR-539-5p(2), mmu-let-7a-5p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-let-7c-5p(1), mmu-miR-146a-5p(1), mmu-miR-216a-5p(1), mmu-miR-203-3p(1), mmu-miR-676-3p(1), mmu-miR-129-5p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GACCTTACGGCAGTTTCGAGTTTCTT
siRNA sets
AAGAAACTCGAAACTGCCG, AGAAACTCGAAACTGCCGT, AACTCGAAACTGCCGTAAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCASCC3_1947_ORF_1
0.9492
0.124098033
0.999983108
1947
ORF sequence:
ATGGCTCTACCTCGGCTCACAGGAGCCTTGCGCTCCTTTTCAAATGTCACCAAGCAAGATAATTACAATGAAGAAGTAGCTGACTTGAAGTTGAAGCGATCTAAACTTCATGAACAAGTTTTAGATTTTGGCCTTACATGGAAGAAGATAGTGAAATTTTTGAATGAAAAGCTAGAGAAGAATAAAATGCAAAATATAAATGAAGACTTAAAAGACATACTACAAGCTGCAAAACAAATCGTTGGAACGGATAATGGGAGAGAAGCAATTGAGAGTGGGGCTGCATTTCTCTTTATGACATTTCACATGACGGACTCTGTTGGTTACATGGAGACAAAGGCTATCAGACAGACGTTTGGTCCCTTTCCATCGTCATCTGCTACTTCAGCTTGTAATGCCACTAATCGAATTATTTCTCATTTTAGTCAAGATGATCTCACTGCTTTTGTCCAGATGGCAGAAAACCCATGTAACGATAGAGTGGTTTTTGGCAAAAACTTAGCATTTTCTTTTGACATGTATGATCTGGACCACTTTGATGAATTACCAATAAATGGTGAATCCCAGAAAACTATAAGCTTAGACTACAAGAAGTTCCTGAATGAACAGTTCCAGGAACCCTACACTCCTGAGCTCAAGCCTGTGGAGAAAACAAATGGCTCCCTATTGTGGTGTGAAGTTGAGAAGTACTTAAACGCAACGTTAAAGGAAATGACTGAAGCAGCAAGAGTTGAAGATCTTTGCTGTACTCTATATGACATGCTTGCTTCTGCTAAAAGCGGCGATGAACTTCAGGACGAGCTGTTTGAATTGCTGGGACCTGAAGGACTGGATCTGATTGAGAAGCTGCTCCAGAACAGAATTACAATTGTAGATCGGTTCCTTAATTCCTCGAGCGATCATAAGTTTCAAGTTCTCCAAGATAGTTGTAAAAAGATTTTAGGAGAGAATTCAAAGCCTAATTATGGATGTCAAGTCACTATTCAATCTGAACAAGAAAAACAGTTAATGAAACAATATCGACGTGAAGAAAAAAGAATTGCCAGGCGAGAAAAAAAGGCTGGAGAAGATGGGGAAGTTTCTGGAGAAGGAGTTTTGCCCTTTGATCCTAAGGAACTCCGGATACAGAGAGAACATGCACTTCTGAATGCTAGAAATGCTCCAATTTTAGGAAGACAGAGAGACGTGGAGTTTGAAAAAATCCGTTATCCTCATGTTTATGATTCCCAGGCTCAGGCCCGAGAAACATCAGCATTCATAGCTGGAGCCAAGATGATTTTACCAGAAGGAATCCAGAGAGAGAATACCAAGCTGTATGAGGAAGTCAGGATCCCCTATGGTGAACCAATGCCAGTTGGGTTTGAGGAAAAACCAGTTTATATCAAAGATTTAGATGAGGTTGGACAGTTGGCTTTTAAAGGAATGAAGAGACTCAATAGAATCCAGTCTATAGTATTTGAAACAGCCTACAACACCAACGAAAACATGCTGATCTGTGCCCCTACGGGAGCTGGGAAGACCAATATTGCAATGCTTACTATCTTACATGAAATCCGCCAACACTTTCATCAAGGTGTTATTAAAAAGAATGAGTTTAAGATTGTGTATGTCGCTCCAATGAAAGCCTTGGCAGCTGAGATGACAAATTACTTCAGCAAACGTCTAGAGCCACTGGGCATTGTTGTGAAAGAATTGACTGGAGATATGCAGTTGTCAAAAAGTGAAATTTTACGAACTCAGATGCTGGTGACCACACCAGAAAAATGGGATGTAGTAACAAGAAAGAGTGTTGGGGATGTTGCTCTTTCCCAAATCGTAAAACTCCTGATTCTTGACGAGGTGCACTTGCTGCATGAAGACAGAGGCCCAGTGCTAGAAAGCATAGTCGCCAGGACCTTACGGCAGTTTCGAGTTTCTTATTTCTATGGATCACTGACTGAGTTATAA
Peptide sequence:
MALPRLTGALRSFSNVTKQDNYNEEVADLKLKRSKLHEQVLDFGLTWKKIVKFLNEKLEKNKMQNINEDLKDILQAAKQIVGTDNGREAIESGAAFLFMTFHMTDSVGYMETKAIRQTFGPFPSSSATSACNATNRIISHFSQDDLTAFVQMAENPCNDRVVFGKNLAFSFDMYDLDHFDELPINGESQKTISLDYKKFLNEQFQEPYTPELKPVEKTNGSLLWCEVEKYLNATLKEMTEAARVEDLCCTLYDMLASAKSGDELQDELFELLGPEGLDLIEKLLQNRITIVDRFLNSSSDHKFQVLQDSCKKILGENSKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDGEVSGEGVLPFDPKELRIQREHALLNARNAPILGRQRDVEFEKIRYPHVYDSQAQARETSAFIAGAKMILPEGIQRENTKLYEEVRIPYGEPMPVGFEEKPVYIKDLDEVGQLAFKGMKRLNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTILHEIRQHFHQGVIKKNEFKIVYVAPMKALAAEMTNYFSKRLEPLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQFRVSYFYGSLTEL
IRESfinder result
IRESfinder score
0.564296888
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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