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mmu_circAscc3_1750
Basic information of circular RNA
PanCircBase ID:
mmu_circAscc3_1750
mm39_Chr. Position ID:
chr10|50566210|50598037|+
Gene name:
Ascc3
Transcript:
ENSMUST00000035606.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
11
Exon/intron indexes:
14,15,16,17,18,19,20,21,22,23,24
Exon/intron offsets:
0,9825,10317,17548,20765,23061,24151,26370,28177,30497,31658
Genomic length:
31827
Exon/intron sizes in nt:
135,192,225,120,165,87,177,226,155,99,169
Flanking exon/introns:
chr10:50536822-50566210|chr10:50598037-50604185
Splice length:
1750
Other database IDs:
circAtlas: mmu-Ascc3_0042
Human Ortholog IDs:
Mature spliced Sequence:
GTGATGGTATTTGTACATGCTCGCAATGCCACTGTAAGGACCGCTATGTCTCTAATAGAGAGAGCAAAAAATAGTGGCCAAATTTCTTGCTTTCTACCCACCGAAGGGCCAGAGTACGGACATGCATTAAAACAGGTACAAAAGTCAAGAAATAAGCAAGTGCGAGAATTATTCTCCGATGGCTTTAGCATTCATCATGCCGGGATGCTTCGGCAAGACAGAAATTTGGTTGAAAATTTGTTTTCAAATGGGCATATCAAAGTCCTAGTCTGTACAGCCACATTAGCCTGGGGTGTCAATCTTCCTGCACATGCCGTGGTTATTAAGGGAACACAAATATACGCTGCCAAAAGAGGCTCCTTTGTTGACCTTGGAATTTTAGATGTCATGCAGATATTTGGCCGAGCTGGACGACCGCAATTTGACAAATTTGGGGAAGGAATCATTATAACAACCCACGATAAACTCAGCCATTACCTCAGTTTGCTCACTCAACAAAACCCAATTGAGAGTCAGTTTCTGGAAAGTCTTGCAGATAACCTAAATGCAGAGATTGCGCTGGGGACAGTCACCAACGTGGAAGAGGCAGTGAGGTGGATGAGTTACACTTACCTCTATGTGCGCATGCGAGCAAACCCGCTAGCATACGGCATCAGTCACAAAGCGTACCAGATTGACCCAACACTAAGGAAGCATCGAGAACAGCTCCTTATTGAAGTTGGACAAAAGTTGGATAAAGCAAAGATGATTCGTTTTGAAGAACGAACTGGCTATTTTTCTTCTACTGATTTGGGTAGAACTGCCAGCCACTTCTATATTAAATACAACACCATTGAGACATTTAATGAACTCTTTGATGCACACAAAACAGAGGGTGATATCTTTGCTATTGTTTCCAAAGCTGAAGAATTTGATCAAATTAAGGTCAGAGAAGAAGAAATAGAAGAATTAGATGCCTTGTTAAACAATTTCTGTGAACTCTCAGCTCCAGGAGGTGTGGAAAATAGTTATGGGAAAATAAATATCCTACTTCAAACCTACATCAGCCGAGGAGAGATGGACAGTTTCTCCCTCATATCAGATTCTGCATATGTCGCCCAGAATGCAGCTAGAATTGTCCGTGCTCTCTTTGAAATTGCACTGAGGAAACGTTGGCCTACCATGACCTACAGGCTTTTGAATCTTAGTAAAGTCATTGACAAGAGACTCTGGGGTTGGGCTAGCCCTTTGAGACAATTTTCTGTGTTACCACCACACATTCTAACAAGATTAGAAGAAAAAAACCTTACTGTGGATAAACTCAAAGACATGAGAAAAGATGAAATAGGTCACATTTTGCATCATGTGAATATTGGACTGAAGGTCAAACAGTGTGTTCATCAAATTCCTTCTGTTACAATGGAAGCTTCCATTCAGCCCATCACACGGACTGTCCTCCGAGTATCACTGAACATCCACCCTGATTTCTCTTGGAATGACCAGGTTCATGGAACAGTGGGGGAACCATGGTGGATTTGGGTAGAAGATCCTACAAATGACCATATTTATCACTCGGAGTACTTTCTAGCTCTTAAAAAACAGGTTATTAATAAGGAAGCTCAACTTCTGGTATTTACAATTCCTATTTTTGAGCCTTTGCCCTCTCAGTACTACATTCGAGCAGTGTCTGATCGATGGCTAGGAGCTGAAGCTGTTTGCATTATCAACTTTCAACATCTGATTCTACCAGAGAGACATCCTCCCCATACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCAGTGTCTGATCGATGGCT
60.18
ACATAGCGGTCCTTACAGTGG
59.52
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGCAGTGTCTGATCGATGGC
60.18
ACATAGCGGTCCTTACAGTGG
59.52
141
PCR template sequence:
TACATTCGAGCAGTGTCTGATCGATGGCTAGGAGCTGAAGCTGTTTGCATTATCAACTTTCAACATCTGATTCTACCAGAGAGACATCCTCCCCATACAGGTGATGGTATTTGTACATGCTCGCAATGCCACTGTAAGGACCGCTATGTCTCTAATAGAGAGAGCAAAAAATAGTGGCCAAATTTCTTGCTTTCTACCCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-130a-3p(1), mmu-miR-148b-3p(1), mmu-miR-431-5p(1), mmu-miR-130b-3p(1), mmu-miR-721(1), mmu-miR-539-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CCTCCCCATACAGGTGATGGTATTTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCASCC3_1750_ORF_1
0.9007
0.037664175
0.999935256
1821
ORF sequence:
ATGGTATTTGTACATGCTCGCAATGCCACTGTAAGGACCGCTATGTCTCTAATAGAGAGAGCAAAAAATAGTGGCCAAATTTCTTGCTTTCTACCCACCGAAGGGCCAGAGTACGGACATGCATTAAAACAGGTACAAAAGTCAAGAAATAAGCAAGTGCGAGAATTATTCTCCGATGGCTTTAGCATTCATCATGCCGGGATGCTTCGGCAAGACAGAAATTTGGTTGAAAATTTGTTTTCAAATGGGCATATCAAAGTCCTAGTCTGTACAGCCACATTAGCCTGGGGTGTCAATCTTCCTGCACATGCCGTGGTTATTAAGGGAACACAAATATACGCTGCCAAAAGAGGCTCCTTTGTTGACCTTGGAATTTTAGATGTCATGCAGATATTTGGCCGAGCTGGACGACCGCAATTTGACAAATTTGGGGAAGGAATCATTATAACAACCCACGATAAACTCAGCCATTACCTCAGTTTGCTCACTCAACAAAACCCAATTGAGAGTCAGTTTCTGGAAAGTCTTGCAGATAACCTAAATGCAGAGATTGCGCTGGGGACAGTCACCAACGTGGAAGAGGCAGTGAGGTGGATGAGTTACACTTACCTCTATGTGCGCATGCGAGCAAACCCGCTAGCATACGGCATCAGTCACAAAGCGTACCAGATTGACCCAACACTAAGGAAGCATCGAGAACAGCTCCTTATTGAAGTTGGACAAAAGTTGGATAAAGCAAAGATGATTCGTTTTGAAGAACGAACTGGCTATTTTTCTTCTACTGATTTGGGTAGAACTGCCAGCCACTTCTATATTAAATACAACACCATTGAGACATTTAATGAACTCTTTGATGCACACAAAACAGAGGGTGATATCTTTGCTATTGTTTCCAAAGCTGAAGAATTTGATCAAATTAAGGTCAGAGAAGAAGAAATAGAAGAATTAGATGCCTTGTTAAACAATTTCTGTGAACTCTCAGCTCCAGGAGGTGTGGAAAATAGTTATGGGAAAATAAATATCCTACTTCAAACCTACATCAGCCGAGGAGAGATGGACAGTTTCTCCCTCATATCAGATTCTGCATATGTCGCCCAGAATGCAGCTAGAATTGTCCGTGCTCTCTTTGAAATTGCACTGAGGAAACGTTGGCCTACCATGACCTACAGGCTTTTGAATCTTAGTAAAGTCATTGACAAGAGACTCTGGGGTTGGGCTAGCCCTTTGAGACAATTTTCTGTGTTACCACCACACATTCTAACAAGATTAGAAGAAAAAAACCTTACTGTGGATAAACTCAAAGACATGAGAAAAGATGAAATAGGTCACATTTTGCATCATGTGAATATTGGACTGAAGGTCAAACAGTGTGTTCATCAAATTCCTTCTGTTACAATGGAAGCTTCCATTCAGCCCATCACACGGACTGTCCTCCGAGTATCACTGAACATCCACCCTGATTTCTCTTGGAATGACCAGGTTCATGGAACAGTGGGGGAACCATGGTGGATTTGGGTAGAAGATCCTACAAATGACCATATTTATCACTCGGAGTACTTTCTAGCTCTTAAAAAACAGGTTATTAATAAGGAAGCTCAACTTCTGGTATTTACAATTCCTATTTTTGAGCCTTTGCCCTCTCAGTACTACATTCGAGCAGTGTCTGATCGATGGCTAGGAGCTGAAGCTGTTTGCATTATCAACTTTCAACATCTGATTCTACCAGAGAGACATCCTCCCCATACAGGTGATGGTATTTGTACATGCTCGCAATGCCACTGTAAGGACCGCTATGTCTCTAATAGAGAGAGCAAAAAATAG
Peptide sequence:
MVFVHARNATVRTAMSLIERAKNSGQISCFLPTEGPEYGHALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVRWMSYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLLIEVGQKLDKAKMIRFEERTGYFSSTDLGRTASHFYIKYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVLRVSLNIHPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTGDGICTCSQCHCKDRYVSNRESKK
IRESfinder result
IRESfinder score
0.655219357
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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