top of page
mmu_circAsb7_366
Basic information of circular RNA
PanCircBase ID:
mmu_circAsb7_366
mm39_Chr. Position ID:
chr7|66328827|66331556|-
Gene name:
Asb7
Transcript:
ENSMUST00000131320.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
3,2
Exon/intron offsets:
0,2625
Genomic length:
2729
Exon/intron sizes in nt:
2,62,104
Flanking exon/introns:
chr7:66327993-66328827|chr7:66331556-66338570
Splice length:
366
Other database IDs:
circAtlas: mmu-Asb7_0002
circBase: hsa_circ_0007550, circAtlas: hsa-ASB7_0001, CIRCpedia: HSA_CIRCpedia_13584
Human Ortholog IDs:
Mature spliced Sequence:
GTGAAGAAGGCCGGCGCACACTGGGAGCCCTTCCCGCCATGCTGCATGCACGCCATGGTTATTAGACAAGCTGTCTACCGAGAGAAGAGACATTCTTCTGTAAGGCTGCCTCCCGTGACCTAATGTCTGGTTGGTGAAAAGCAGACTCCACTAGGATGTTACACCACCACTGCCGGAGGAACCCTGAGCTTCAGGAAGAGTTGCAGATTCAGGCTGCAGTGGCAGCCGGGGATGTTCACACAGTACGAAAGATGTTGGAACAAGGCTATTCCCCAAATGGCCGAGATGCCAATGGCTGGACCTTGCTCCATTTCTCTGCAGCAAGAGGAAAGGAGAGGTGTGTTCGAGTGTTTCTGGAACACGGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTCCCCAAATGGCCGAGATG
60.4
AATAACCATGGCGTGCATGC
59.9
161
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATTCCCCAAATGGCCGAGAT
59.44
AATAACCATGGCGTGCATGC
59.9
162
PCR template sequence:
TATTCCCCAAATGGCCGAGATGCCAATGGCTGGACCTTGCTCCATTTCTCTGCAGCAAGAGGAAAGGAGAGGTGTGTTCGAGTGTTTCTGGAACACGGAGGTGAAGAAGGCCGGCGCACACTGGGAGCCCTTCCCGCCATGCTGCATGCACGCCATGGTTATTAGACAAGCTGTCTACCGAGAGAAGAGACATTCTTCTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-103-3p(1), mmu-miR-34c-5p(1), mmu-miR-30d-5p(1), mmu-miR-127-5p(1), mmu-miR-107-3p(1), mmu-miR-680(1), mmu-miR-697(1)
siRNAs for circular RNA silencing
Junction sequence
CTGGAACACGGAGGTGAAGAAGGCCG
siRNA sets
TTCTTCACCTCCGTGTTCC, TCTTCACCTCCGTGTTCCA, CTTCTTCACCTCCGTGTTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCASB7_366_ORF_1
0.849
0.187772187
0.28455455
276
ORF sequence:
ATGTTACACCACCACTGCCGGAGGAACCCTGAGCTTCAGGAAGAGTTGCAGATTCAGGCTGCAGTGGCAGCCGGGGATGTTCACACAGTACGAAAGATGTTGGAACAAGGCTATTCCCCAAATGGCCGAGATGCCAATGGCTGGACCTTGCTCCATTTCTCTGCAGCAAGAGGAAAGGAGAGGTGTGTTCGAGTGTTTCTGGAACACGGAGGTGAAGAAGGCCGGCGCACACTGGGAGCCCTTCCCGCCATGCTGCATGCACGCCATGGTTATTAG
Peptide sequence:
MLHHHCRRNPELQEELQIQAAVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGGEEGRRTLGALPAMLHARHGY
IRESfinder result
IRESfinder score
0.261265679
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page