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mmu_circAsb1_836
Basic information of circular RNA
PanCircBase ID:
mmu_circAsb1_836
mm39_Chr. Position ID:
chr1|91471872|91480161|+
Gene name:
Asb1
Transcript:
ENSMUST00000027538.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
2,3,4
Exon/intron offsets:
0,2777,7903
Genomic length:
8289
Exon/intron sizes in nt:
14,73,03,386
Flanking exon/introns:
chr1:91468586-91471872|chr1:91480161-91482472
Splice length:
836
Other database IDs:
circAtlas: hsa-ASB1_0001
Human Ortholog IDs:
Mature spliced Sequence:
TGCAGGTCCTAATCTGAAGGAGTGGCTGAGGGAGCAGTTCTGTGACCATCCACTGGAGCACTGTGACGATACAAGACTCCATGATGCAGCCTATGTAGGGGACCTCCAGACCCTCAGGAACCTACTGCAAGAGGAGAGCTACCGGAGCCGCATCAATGAGAAGTCTGTCTGGTGCTGCGGCTGGCTTCCCTGCACACCACTGAGGATCGCAGCCACTGCAGGCCATGGGAACTGTGTGGACTTCCTCATACGCAAAGGGGCCGAGGTGGACCTGGTGGATGTCAAGGGGCAGACTGCCCTGTATGTGGCTGTAGTGAACGGGCACTTGGAGAGCACTGAGATCCTTTTGGAAGCTGGTGCTGATCCCAACGGCAGCCGGCACCACCGCAGCACTCCTGTGTACCATGCCTCTCGTGTGGGTAGGGACGACATCCTGAAGGCTCTTATCAGGTATGGGGCAGATGTTGATGTCAACCATCATCTGACTCCTGACACCCGGCCCCCTTTTTCACGGCGGCTAACCTCCTTGGTGGTCTGTCCTCTATACATCAGTGCTGCCTACCATAACCTTCAGTGCTTCAGGCTGCTCTTGCAGGCTGGGGCAAATCCTGACTTCAATTGCAATGGCCCTGTCAACACCCAGGAGTTCTACAGGGGATCCCCTGGGTGTGTCATGGATGCTGTCCTGCGCCATGGCTGTGAAGCAGCCTTCGTGAGTCTGTTGGTAGAGTTTGGAGCCAACCTGAACCTGGTGAAGTGGGAATCCCTGGGCCCAGAGGCAAGAGGCAGAAGAAAGATGGATCCTGAGGCCTTGCAGGTCTTTAAAGAGGCCAGAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTGAAGTGGGAATCCCTGGG
60.03
ATCGTCACAGTGCTCCAGTG
60.04
155
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGTGAAGTGGGAATCCCTGG
60.03
ATCGTCACAGTGCTCCAGTG
60.04
156
PCR template sequence:
GCCAACCTGAACCTGGTGAAGTGGGAATCCCTGGGCCCAGAGGCAAGAGGCAGAAGAAAGATGGATCCTGAGGCCTTGCAGGTCTTTAAAGAGGCCAGAATGCAGGTCCTAATCTGAAGGAGTGGCTGAGGGAGCAGTTCTGTGACCATCCACTGGAGCACTGTGACGATACAAGACTCCATGATGCAGCCTATGTAGGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-326-3p(1), mmu-miR-128-3p(1), mmu-miR-541-5p(1), mmu-miR-673-5p(1), mmu-miR-202-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AAAGAGGCCAGAATGCAGGTCCTAAT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCASB1_836_ORF_1
0.958
0.271983082
0.251674218
180
ORF sequence:
ATGGATGCTGTCCTGCGCCATGGCTGTGAAGCAGCCTTCGTGAGTCTGTTGGTAGAGTTTGGAGCCAACCTGAACCTGGTGAAGTGGGAATCCCTGGGCCCAGAGGCAAGAGGCAGAAGAAAGATGGATCCTGAGGCCTTGCAGGTCTTTAAAGAGGCCAGAATGCAGGTCCTAATCTGA
Peptide sequence:
MDAVLRHGCEAAFVSLLVEFGANLNLVKWESLGPEARGRRKMDPEALQVFKEARMQVLI
IRESfinder result
IRESfinder score
0.345087383
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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