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mmu_circAsap1_308
Basic information of circular RNA
PanCircBase ID:
mmu_circAsap1_308
mm39_Chr. Position ID:
chr15|64007654|64024779|-
Gene name:
Asap1
Transcript:
ENSMUST00000177371.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
13,12,11,10
Exon/intron offsets:
0,2148,13800,17024
Genomic length:
17125
Exon/intron sizes in nt:
49,88,70,101
Flanking exon/introns:
chr15:64002116-64007654|chr15:64024779-64030730
Splice length:
308
Other database IDs:
circAtlas: mmu-Asap1_0018
Human Ortholog IDs:
Mature spliced Sequence:
GACTCTCAGAGCCGGCAAGGTGGGTACAGCATGCATCAGCTCCAGGGCAACAAGGAGTACGGCAGTGAAAAGAAGGGCTTCCTGCTGAAGAAGAGTGATGGGATCCGGAAAGTGTGGCAGAGACGGAAGTGTGCGGTCAAGAACGGGATCCTGACCATCTCCCACGCAACTTCCAACAGGCAGCCTGCTAAGTTAAACCTCCTCACCTGCCAAGTGAAACCGAATGCTGAGGACAAGAAGTCTTTTGACCTGATATCACATAATCGAACATATCACTTTCAAGCAGAAGATGAGCAGGATTATATAGC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCCAAGTGAAACCGAATGCT
59.4
CTTGTTGCCCTGGAGCTGAT
60.32
154
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCCAAGTGAAACCGAATGCT
59.4
AGCTGATGCATGCTGTACCC
60.47
141
PCR template sequence:
GCCAAGTGAAACCGAATGCTGAGGACAAGAAGTCTTTTGACCTGATATCACATAATCGAACATATCACTTTCAAGCAGAAGATGAGCAGGATTATATAGCGACTCTCAGAGCCGGCAAGGTGGGTACAGCATGCATCAGCTCCAGGGCAACAAGGAGTACGGCAGTGAAAAGAAGGGCTTCCTGCTGAAGAAGAGTGATG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-705(1), mmu-miR-29b-2-5p(1), mmu-miR-190b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AGGATTATATAGCGACTCTCAGAGCC
siRNA sets
AGAGTCGCTATATAATCCT, GAGAGTCGCTATATAATCC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCASAP1_308_ORF_1
0.8007
0.278639673
0.502971757
366
ORF sequence:
ATGCATCAGCTCCAGGGCAACAAGGAGTACGGCAGTGAAAAGAAGGGCTTCCTGCTGAAGAAGAGTGATGGGATCCGGAAAGTGTGGCAGAGACGGAAGTGTGCGGTCAAGAACGGGATCCTGACCATCTCCCACGCAACTTCCAACAGGCAGCCTGCTAAGTTAAACCTCCTCACCTGCCAAGTGAAACCGAATGCTGAGGACAAGAAGTCTTTTGACCTGATATCACATAATCGAACATATCACTTTCAAGCAGAAGATGAGCAGGATTATATAGCGACTCTCAGAGCCGGCAAGGTGGGTACAGCATGCATCAGCTCCAGGGCAACAAGGAGTACGGCAGTGAAAAGAAGGGCTTCCTGCTGA
Peptide sequence:
MHQLQGNKEYGSEKKGFLLKKSDGIRKVWQRRKCAVKNGILTISHATSNRQPAKLNLLTCQVKPNAEDKKSFDLISHNRTYHFQAEDEQDYIATLRAGKVGTACISSRATRSTAVKRRASC
IRESfinder result
IRESfinder score
0.348869748
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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