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mmu_circAsah2_1119
Basic information of circular RNA
PanCircBase ID:
mmu_circAsah2_1119
mm39_Chr. Position ID:
chr19|32020880|32038860|-
Gene name:
Asah2
Transcript:
ENSMUST00000236208.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
10,9,8,7,6,5,4,3
Exon/intron offsets:
0,1409,2604,9352,10999,14316,17071,17806
Genomic length:
17980
Exon/intron sizes in nt:
78,128,177,150,161,129,122,174
Flanking exon/introns:
chr19:32002321-32020880|chr19:32038860-32078949
Splice length:
1119
Other database IDs:
CIRCpedia: MMU_CIRCpedia_16371
Human Ortholog IDs:
Mature spliced Sequence:
GTATGCTAATGAGAGCGTTAATGCTCCTGGACTTGACTATGGAATCTCTCTTCAGTAGATTTGGAAACACATTGAGAAATCAGCCTGAGCAACCTGCAAGGCACAAGGCACAAGATTCTGCATGGTTATTTGCTCTCCCAGGAGGTGAACACTTGTTTTGATTAACAGAGTCAGGGTTGAGATGCCCAGTTGTTCCTCATCTTGGCTCAGAAGAAGCACCTAGGAATAAAAGCTCTAAGCTGGTATTAAGTAGAATGGGCTTAAAGTCCACTACAGGAAACAACAGCTAGTGACAGAAATGGCAAAGCGAACCTTCTCCACCTTGGAGGCATTCCTCATTTTCCTTCTGGTAATAATGACAGTCATCACAGTGGCCCTTCTCACCCTCTTGTTTGTTACCAGTGGGACCATTGAAAACCACAAAGATTCAGGAAATCACTGGTTTTCAACCACTCTGGGCTCCACGACAACCCAGCCCCCTCCAATTACACAGACTCCAAACTTCCCTTCATTTCGGAACTTCAGTGGCTACTACATTGGCGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATCAATTTGATGGGCTATGGCAAAAATGGCCAGAATGCACGGGGTCTCCTCACCAGGCTGTTCAGCCGTGCTTTTATCTTGGCGGATCCAGATGGGTCAAATCGAATGGCATTTGTGAGCGTGGAACTATGTATGATTTCCCAACGACTGAGGTTGGAGGTCCTGAAGAGACTAGAGAGTAAATATGGCTCTCTGTATCGAAGAGACAATGTTATCCTGAGTGCCATTCACACACACTCTGGCCCAGCAGGGTTTTTCCAATATACACTCTATATACTCGCCAGCGAGGGATTCAGCAACCGGACCTTTCAGTACATAGTCTCTGGGATCATGAAGAGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAGGTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCTGGTCTTGAAACTGGTGG
59.05
GCAGGTTGCTCAGGCTGATT
60.96
148
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCTGGTCTTGAAACTGGTGG
59.05
AGGTTGCTCAGGCTGATTTCT
59.65
146
PCR template sequence:
ATCCACAGTCAGAGAGAGCAAGGTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAGGTATGCTAATGAGAGCGTTAATGCTCCTGGACTTGACTATGGAATCTCTCTTCAGTAGATTTGGAAACACATTGAGAAATCAGCCTGAGCAACCTGCAAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
12
Interacting miRNAs (#binding sites)
mmu-miR-140-5p(1), mmu-miR-150-5p(1), mmu-miR-322-5p(1), mmu-miR-495-3p(1), mmu-miR-433-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-370-3p(1), mmu-miR-183-5p(1), mmu-miR-466d-3p(1), mmu-miR-350-3p(1), mmu-miR-574-5p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TGGGTCTTATCAGGTATGCTAATGAG
siRNA sets
TTAGCATACCTGATAAGAC, TAGCATACCTGATAAGACC, AGCATACCTGATAAGACCC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCASAH2_1119_ORF_1
0.8465
0.140284389
0.960663682
879
ORF sequence:
ATGGCAAAGCGAACCTTCTCCACCTTGGAGGCATTCCTCATTTTCCTTCTGGTAATAATGACAGTCATCACAGTGGCCCTTCTCACCCTCTTGTTTGTTACCAGTGGGACCATTGAAAACCACAAAGATTCAGGAAATCACTGGTTTTCAACCACTCTGGGCTCCACGACAACCCAGCCCCCTCCAATTACACAGACTCCAAACTTCCCTTCATTTCGGAACTTCAGTGGCTACTACATTGGCGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATCAATTTGATGGGCTATGGCAAAAATGGCCAGAATGCACGGGGTCTCCTCACCAGGCTGTTCAGCCGTGCTTTTATCTTGGCGGATCCAGATGGGTCAAATCGAATGGCATTTGTGAGCGTGGAACTATGTATGATTTCCCAACGACTGAGGTTGGAGGTCCTGAAGAGACTAGAGAGTAAATATGGCTCTCTGTATCGAAGAGACAATGTTATCCTGAGTGCCATTCACACACACTCTGGCCCAGCAGGGTTTTTCCAATATACACTCTATATACTCGCCAGCGAGGGATTCAGCAACCGGACCTTTCAGTACATAGTCTCTGGGATCATGAAGAGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAGGTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAGGTATGCTAATGAGAGCGTTAATGCTCCTGGACTTGACTATGGAATCTCTCTTCAGTAG
Peptide sequence:
MAKRTFSTLEAFLIFLLVIMTVITVALLTLLFVTSGTIENHKDSGNHWFSTTLGSTTTQPPPITQTPNFPSFRNFSGYYIGVGRADCTGQVSDINLMGYGKNGQNARGLLTRLFSRAFILADPDGSNRMAFVSVELCMISQRLRLEVLKRLESKYGSLYRRDNVILSAIHTHSGPAGFFQYTLYILASEGFSNRTFQYIVSGIMKSIDIAHTNLKPGKIFINKGNVANVQINRSPSSYLLNPQSERARYSSNTDKEMLVLKLVDLNGEDLGLIRYANESVNAPGLDYGISLQ
IRESfinder result
IRESfinder score
0.689110743
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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