top of page
mmu_circArsb_830
Basic information of circular RNA
PanCircBase ID:
mmu_circArsb_830
mm39_Chr. Position ID:
chr13|93926546|93998838|+
Gene name:
Arsb
Transcript:
ENSMUST00000091403.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
2,3,4,5
Exon/intron offsets:
0,3989,17457,72048
Genomic length:
72292
Exon/intron sizes in nt:
1,87,19,12,08,244
Flanking exon/introns:
chr13:93908600-93926546|chr13:93998838-94016995
Splice length:
830
Other database IDs:
circAtlas: mmu-Arsb_0004
circAtlas: hsa-ARSB_0004
Human Ortholog IDs:
Mature spliced Sequence:
ATCCATTTGGGCTTACAGCATTACCTCATCATGACCTGTCAGCCCAGCTGTGTTCCCCTAGACGAAAAACTCCTGCCCCAGCTTTTAAAGGAAGCAGGCTATGCTACGCACATGGTCGGGAAATGGCACCTGGGGATGTACCGGAAAGAATGTCTGCCGACACGCCGAGGATTCGATACCTACTTCGGATACCTCCTAGGCAGTGAAGACTATTACACCCACGAGGCCTGTGCGCCGATTGAGTCTTTGAATGGTACCCGCTGTGCGCTTGACTTAAGAGATGGTGAAGAACCTGCAAAAGAGTATAACAATATTTACTCAACAAACATATTTACCAAAAGGGCTACAACCGTCATAGCTAACCACCCACCGGAGAAACCACTGTTCCTCTACCTTGCTTTCCAGTCTGTCCACGATCCCCTGCAGGTCCCTGAGGAGTACATGGAGCCATATGGCTTCATCCAAGATAAGCACAGACGTATTTATGCAGGGATGGTGTCCCTCATGGATGAAGCAGTGGGGAACGTCACCAAAGCCTTGAAAAGCCACGGGCTCTGGAACAACACGGTCTTCATCTTCTCCACAGATAACGGTGGGCAGACTAGGTCTGGAGGCAACAACTGGCCACTCCGAGGAAGGAAGGGGACCCTGTGGGAAGGGGGCATCCGAGGAACGGGCTTCGTGGCAAGCCCCTTGCTGAAACAGAAAGGCGTGAAGAGCCGGGAACTCATGCACATCACCGATTGGCTCCCCACACTCGTAGATCTGGCTGGGGGAAGCACTAATGGAACCAAACCTCTGGATGGCTTCAACATGTGGAAGACAATCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCCACACTCGTAGATCTGGC
59.9
AAGCTGGGGCAGGAGTTTTT
60.11
164
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCCACACTCGTAGATCTGGC
59.9
AAAGCTGGGGCAGGAGTTTT
60.11
165
PCR template sequence:
TGCACATCACCGATTGGCTCCCCACACTCGTAGATCTGGCTGGGGGAAGCACTAATGGAACCAAACCTCTGGATGGCTTCAACATGTGGAAGACAATCAGATCCATTTGGGCTTACAGCATTACCTCATCATGACCTGTCAGCCCAGCTGTGTTCCCCTAGACGAAAAACTCCTGCCCCAGCTTTTAAAGGAAGCAGGCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-210-3p(1), mmu-miR-140-5p(1), mmu-miR-320-3p(1), mmu-miR-149-5p(1), mmu-miR-433-3p(1), mmu-miR-218-5p(1), mmu-miR-29b-2-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GGAAGACAATCAGATCCATTTGGGCT
siRNA sets
ATGGATCTGATTGTCTTCC, AATGGATCTGATTGTCTTC, AAATGGATCTGATTGTCTT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCARSB_830_ORF_1
0.8216
0.242340802
0.962859424
834
ORF sequence:
ATGACCTGTCAGCCCAGCTGTGTTCCCCTAGACGAAAAACTCCTGCCCCAGCTTTTAAAGGAAGCAGGCTATGCTACGCACATGGTCGGGAAATGGCACCTGGGGATGTACCGGAAAGAATGTCTGCCGACACGCCGAGGATTCGATACCTACTTCGGATACCTCCTAGGCAGTGAAGACTATTACACCCACGAGGCCTGTGCGCCGATTGAGTCTTTGAATGGTACCCGCTGTGCGCTTGACTTAAGAGATGGTGAAGAACCTGCAAAAGAGTATAACAATATTTACTCAACAAACATATTTACCAAAAGGGCTACAACCGTCATAGCTAACCACCCACCGGAGAAACCACTGTTCCTCTACCTTGCTTTCCAGTCTGTCCACGATCCCCTGCAGGTCCCTGAGGAGTACATGGAGCCATATGGCTTCATCCAAGATAAGCACAGACGTATTTATGCAGGGATGGTGTCCCTCATGGATGAAGCAGTGGGGAACGTCACCAAAGCCTTGAAAAGCCACGGGCTCTGGAACAACACGGTCTTCATCTTCTCCACAGATAACGGTGGGCAGACTAGGTCTGGAGGCAACAACTGGCCACTCCGAGGAAGGAAGGGGACCCTGTGGGAAGGGGGCATCCGAGGAACGGGCTTCGTGGCAAGCCCCTTGCTGAAACAGAAAGGCGTGAAGAGCCGGGAACTCATGCACATCACCGATTGGCTCCCCACACTCGTAGATCTGGCTGGGGGAAGCACTAATGGAACCAAACCTCTGGATGGCTTCAACATGTGGAAGACAATCAGATCCATTTGGGCTTACAGCATTACCTCATCATGA
Peptide sequence:
MTCQPSCVPLDEKLLPQLLKEAGYATHMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSEDYYTHEACAPIESLNGTRCALDLRDGEEPAKEYNNIYSTNIFTKRATTVIANHPPEKPLFLYLAFQSVHDPLQVPEEYMEPYGFIQDKHRRIYAGMVSLMDEAVGNVTKALKSHGLWNNTVFIFSTDNGGQTRSGGNNWPLRGRKGTLWEGGIRGTGFVASPLLKQKGVKSRELMHITDWLPTLVDLAGGSTNGTKPLDGFNMWKTIRSIWAYSITSS
IRESfinder result
IRESfinder score
0.459176761
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page