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mmu_circArnt_157
Basic information of circular RNA
PanCircBase ID:
mmu_circArnt_157
mm39_Chr. Position ID:
chr3|95355682|95359940|+
Gene name:
Arnt
Transcript:
ENSMUST00000147765.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
2,3
Exon/intron offsets:
0,4213
Genomic length:
4258
Exon/intron sizes in nt:
112,45
Flanking exon/introns:
chr3:95341872-95355682|chr3:95359940-95367687
Splice length:
157
Other database IDs:
circAtlas: mmu-Arnt_0007
circAtlas: hsa-ARNT_0009, CIRCpedia: HSA_CIRCpedia_373406
Human Ortholog IDs:
Mature spliced Sequence:
AAATGACATCAGATGTACCATCGCTGGGTCCCACCATTGCTTCTGGAAACCCTGGACCTGGGATTCAAGGTGGAGGAGCTGTTGTACAGAGGGCTATTAAGCGACGGTCAGGGCTGGATTTTGATGATGAAGTAGAAGTGAACACTAAATTTTTGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TATTAAGCGACGGTCAGGGC
59.9
CCACCTTGAATCCCAGGTCC
60.03
136
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TATTAAGCGACGGTCAGGGC
59.9
GTCCAGGGTTTCCAGAAGCA
59.89
120
PCR template sequence:
TGTTGTACAGAGGGCTATTAAGCGACGGTCAGGGCTGGATTTTGATGATGAAGTAGAAGTGAACACTAAATTTTTGAGAAATGACATCAGATGTACCATCGCTGGGTCCCACCATTGCTTCTGGAAACCCTGGACCTGGGATTCAAGGTGGAGGAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
CTAAATTTTTGAGAAATGACATCAGA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCARNT_157_ORF_1
0.7559
-0.01591817
0.112078078
255
ORF sequence:
ATGACATCAGATGTACCATCGCTGGGTCCCACCATTGCTTCTGGAAACCCTGGACCTGGGATTCAAGGTGGAGGAGCTGTTGTACAGAGGGCTATTAAGCGACGGTCAGGGCTGGATTTTGATGATGAAGTAGAAGTGAACACTAAATTTTTGAGAAATGACATCAGATGTACCATCGCTGGGTCCCACCATTGCTTCTGGAAACCCTGGACCTGGGATTCAAGGTGGAGGAGCTGTTGTACAGAGGGCTATTAA
Peptide sequence:
MTSDVPSLGPTIASGNPGPGIQGGGAVVQRAIKRRSGLDFDDEVEVNTKFLRNDIRCTIAGSHHCFWKPWTWDSRWRSCCTEGY
IRESfinder result
IRESfinder score
0.262861556
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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