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mmu_circArhgap32_398
Basic information of circular RNA
PanCircBase ID:
mmu_circArhgap32_398
mm39_Chr. Position ID:
chr9|32150557|32157358|+
Gene name:
Arhgap32
Transcript:
ENSMUST00000174641.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
11,12,13
Exon/intron offsets:
0,5890,6656
Genomic length:
6801
Exon/intron sizes in nt:
15,01,03,145
Flanking exon/introns:
chr9:32119561-32150557|chr9:32157358-32157742
Splice length:
398
Other database IDs:
circAtlas: hsa-SCAF8_0001
Human Ortholog IDs:
Mature spliced Sequence:
TGTCTAAAAAGCACGGCAAGCTCATTACTTTCTTGCGAACATTCATGAAGTCTCGCCCAACAAAACAGAAGCTAAAGCAGCGGGGCATCTTGAAAGAGAGAGTATTCGGTTGTGACTTGGGGGAGCACCTCCTCAATTCTGGGTTTGAAGTGCCCCAGGTTCTTCAGAGCTGCACAGCGTTCATCGAGAGGTATGGCATTGTGGATGGGATATATCGTCTCTCTGGCGTTGCCTCCAATATCCAGAGACTTCGTCATGAATTTGATTCTGAGCATGTCCCCGACCTGACAAAAGAACCTTATGTTCAAGACATCCATTCTGTGGGCTCCCTCTGTAAGCTGTACTTCCGAGAACTCCCAAACCCTCTGCTCACCTACCAGCTATACGAGAAGTTCTCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCGAGAACTCCCAAACCCTC
60.04
TCTCTTTCAAGATGCCCCGC
60.39
151
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCGAGAACTCCCAAACCCTC
60.04
CTCTTTCAAGATGCCCCGCT
60.39
150
PCR template sequence:
TTATGTTCAAGACATCCATTCTGTGGGCTCCCTCTGTAAGCTGTACTTCCGAGAACTCCCAAACCCTCTGCTCACCTACCAGCTATACGAGAAGTTCTCTTGTCTAAAAAGCACGGCAAGCTCATTACTTTCTTGCGAACATTCATGAAGTCTCGCCCAACAAAACAGAAGCTAAAGCAGCGGGGCATCTTGAAAGAGAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-298-5p(1), mmu-miR-224-5p(1), mmu-miR-490-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CGAGAAGTTCTCTTGTCTAAAAAGCA
siRNA sets
TTTTAGACAAGAGAACTTC, TTTAGACAAGAGAACTTCT, TTTTTAGACAAGAGAACTT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCARHGAP32_398_ORF_1
0.6605
0.152901009
0.375815203
402
ORF sequence:
ATGAAGTCTCGCCCAACAAAACAGAAGCTAAAGCAGCGGGGCATCTTGAAAGAGAGAGTATTCGGTTGTGACTTGGGGGAGCACCTCCTCAATTCTGGGTTTGAAGTGCCCCAGGTTCTTCAGAGCTGCACAGCGTTCATCGAGAGGTATGGCATTGTGGATGGGATATATCGTCTCTCTGGCGTTGCCTCCAATATCCAGAGACTTCGTCATGAATTTGATTCTGAGCATGTCCCCGACCTGACAAAAGAACCTTATGTTCAAGACATCCATTCTGTGGGCTCCCTCTGTAAGCTGTACTTCCGAGAACTCCCAAACCCTCTGCTCACCTACCAGCTATACGAGAAGTTCTCTTGTCTAAAAAGCACGGCAAGCTCATTACTTTCTTGCGAACATTCATGA
Peptide sequence:
MKSRPTKQKLKQRGILKERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGIVDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSCLKSTASSLLSCEHS
IRESfinder result
IRESfinder score
0.697796964
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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