top of page
mmu_circArhgap32_373
Basic information of circular RNA
PanCircBase ID:
mmu_circArhgap32_373
mm39_Chr. Position ID:
chr9|32040865|32081472|+
Gene name:
Arhgap32
Transcript:
ENSMUST00000174641.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
2,3,4,5
Exon/intron offsets:
0,22352,23470,40520
Genomic length:
40607
Exon/intron sizes in nt:
109,92,85,87
Flanking exon/introns:
chr9:32027547-32040865|chr9:32081472-32093137
Splice length:
373
Other database IDs:
CIRCpedia: MMU_CIRCpedia_16383, circAtlas: mmu-Arhgap32_0006
circBase: hsa_circ_0024843, circAtlas: hsa-ARHGAP32_0003, CIRCpedia: HSA_CIRCpedia_3711
Human Ortholog IDs:
Mature spliced Sequence:
AAAGATGAAGTCCTCAATACATTCTGAAGAGGATGATTTTGTTCCAGAGCTACATAGAAATGTTCACCCCCGAGAGCGGCCTGATTGGGAGGAAACACTCAGCGCAATGGCAAGAGGAGCAGATGTCCCTGAGATCCCTGGAGACCTGACTCTTAAGTCCTGTGGCAGTACAGCGAGCACGAAGGTTAAGCATGTGAAGAAGTTACCCTTCACAAAGGGACACTTTCCAAAGATGGCTGAATGTGCACATTTTCATTATGAGAACGTGGAGTTTGGCAGCATACAGCTCTCACTATCAGAAGAACAGAATGAAGTAATGAAAAATGGCTGTGAATCTAAAGAGCTGGTCTACCTCGTGCAGATTGCCTGTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGCTGTGAATCTAAAGAGCTGG
59.06
TGTTTCCTCCCAATCAGGCC
59.96
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGCTGTGAATCTAAAGAGCTG
58.4
TGTTTCCTCCCAATCAGGCC
59.96
146
PCR template sequence:
TGGCAGCATACAGCTCTCACTATCAGAAGAACAGAATGAAGTAATGAAAAATGGCTGTGAATCTAAAGAGCTGGTCTACCTCGTGCAGATTGCCTGTCAGAAAGATGAAGTCCTCAATACATTCTGAAGAGGATGATTTTGTTCCAGAGCTACATAGAAATGTTCACCCCCGAGAGCGGCCTGATTGGGAGGAAACACTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-let-7a-5p(1), mmu-miR-181a-5p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-let-7c-5p(1), mmu-miR-211-5p(1), mmu-miR-204-5p(1), mmu-miR-181b-5p(1), mmu-miR-98-5p(1), mmu-miR-335-3p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GATTGCCTGTCAGAAAGATGAAGTCC
siRNA sets
TTCATCTTTCTGACAGGCA,ATCTTTCTGACAGGCAATC,GACTTCATCTTTCTGACAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCARHGAP32_373_ORF_1
0.8912
0.159356931
0.525178143
423
ORF sequence:
ATGGCTGTGAATCTAAAGAGCTGGTCTACCTCGTGCAGATTGCCTGTCAGAAAGATGAAGTCCTCAATACATTCTGAAGAGGATGATTTTGTTCCAGAGCTACATAGAAATGTTCACCCCCGAGAGCGGCCTGATTGGGAGGAAACACTCAGCGCAATGGCAAGAGGAGCAGATGTCCCTGAGATCCCTGGAGACCTGACTCTTAAGTCCTGTGGCAGTACAGCGAGCACGAAGGTTAAGCATGTGAAGAAGTTACCCTTCACAAAGGGACACTTTCCAAAGATGGCTGAATGTGCACATTTTCATTATGAGAACGTGGAGTTTGGCAGCATACAGCTCTCACTATCAGAAGAACAGAATGAAGTAATGAAAAATGGCTGTGAATCTAAAGAGCTGGTCTACCTCGTGCAGATTGCCTGTCAG
Peptide sequence:
MAVNLKSWSTSCRLPVRKMKSSIHSEEDDFVPELHRNVHPRERPDWEETLSAMARGADVPEIPGDLTLKSCGSTASTKVKHVKKLPFTKGHFPKMAECAHFHYENVEFGSIQLSLSEEQNEVMKNGCESKELVYLVQIACQ
IRESfinder result
IRESfinder score
0.403256707
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page