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mmu_circArhgap27_1032
Basic information of circular RNA
PanCircBase ID:
mmu_circArhgap27_1032
mm39_Chr. Position ID:
chr11|103228550|103231230|-
Gene name:
Arhgap27
Transcript:
ENSMUST00000107024.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
10,9,8,7,6,5,4
Exon/intron offsets:
0,582,963,1300,1471,1730,2260
Genomic length:
2680
Exon/intron sizes in nt:
105,91,68,84,81,183,420
Flanking exon/introns:
chr11:103226125-103228550|chr11:103231230-103251072
Splice length:
1032
Other database IDs:
circAtlas: hsa-ARHGAP27_0001, CIRCpedia: HSA_CIRCpedia_356810
Human Ortholog IDs:
Mature spliced Sequence:
GTGGACGACCCCCCGGAACCAGTGTATGCCAATGTAGAGAGGCAACCTCGGGCCACGTCGCCTCGCTCAGCTGCAGCTCCTCCTCGGCTCAGCCCAGTGTGGGAGACACACACAGACACGGGCACTGGGCGCCCCTACTACTACAACCCCGACACGGGCGTGACCACCTGGGAGTCACCCTTTGAAACACCTGAAGGCACCACCAGCCCGGCCACCTCCCGGGCCTCTGTGGGTAGCGGGGAGAGCCTGGAGACAGAGTGGGGCCAGTACTGGGATGAGGAGAGCCGCAGGGTCTTCTTCTACAACCCCTTGACCGGTGAGACGGCCTGGGAGGACGAGACCGAGGAGCTGGAGGAAGATCACCAGGAACAACTGGAAATGCAACCCAGCCTGAGCCCGCGAAGCCCCGGGCAGCAGAGGCCCCCAACTCCTGAAACAGACTACCCCGAATTACTGGCCAGTTACCCTGAAGAGGACTACTCTCCTGTGGGCTCCTTCAGTGATCCGGGCCCCGCTTCTCCTTTGGTTGCACCCCCTGGCTGGTCCTGTCAAATTACCCCAGACAAACAGATGCTCTACACCAACCAGTTCACTCAAGAGCAGTGGGTAAGGTTGGAGGACCAGCACGGGAAGCCATATTTCTACAACCCAGAGGACTCCTCTGTTCAGTGGGAGCTACCCCAGGTCCCGATCCCTGCCCCCCGAAGTGTCCGCAAATCCAGCCAGGATAGCGACACTCCAGCCCAGGCTAGCCCTCCAGAGGAGAAGATCAAGACTCTGGACAAGGCAGGAGTCCTCCATCGTACCAAGACGGTAGACAAGGGGAAGAGACTTCGGAAGAAACACTGGAGCACCTCCTGGACAGTGTTGGAGGGCGGGGTCCTGACCTTCTTCAAGGACTCAAAGACCTCAGCTGCAGGCGGCCTGAGGCAGCCTTCCAAGCTCTCCACCCCTGAATACACAGTCGAACTGAAGGGGGCCTCTCTCTCTTGGGCCCCCAAAGACAAATCCAGCAAGAAGAATGTGTTAGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CAAGCTCTCCACCCCTGAAT
59.38
AGGTTGCCTCTCTACATTGGC
60.07
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAAGCTCTCCACCCCTGAAT
59.38
GGTTGCCTCTCTACATTGGC
58.62
141
PCR template sequence:
GCCTTCCAAGCTCTCCACCCCTGAATACACAGTCGAACTGAAGGGGGCCTCTCTCTCTTGGGCCCCCAAAGACAAATCCAGCAAGAAGAATGTGTTAGAGGTGGACGACCCCCCGGAACCAGTGTATGCCAATGTAGAGAGGCAACCTCGGGCCACGTCGCCTCGCTCAGCTGCAGCTCCTCCTCGGCTCAGCCCAGTGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-122-5p(1), mmu-miR-138-5p(1), mmu-miR-149-5p(1), mmu-miR-382-5p(1), mmu-miR-484(1), mmu-miR-188-3p(1), mmu-miR-3470b(1), mmu-miR-193b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GAATGTGTTAGAGGTGGACGACCCCC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCARHGAP27_1032_ORF_1
0.8624
0.361940293
0.999952699
1686
ORF sequence:
ATGCAACCCAGCCTGAGCCCGCGAAGCCCCGGGCAGCAGAGGCCCCCAACTCCTGAAACAGACTACCCCGAATTACTGGCCAGTTACCCTGAAGAGGACTACTCTCCTGTGGGCTCCTTCAGTGATCCGGGCCCCGCTTCTCCTTTGGTTGCACCCCCTGGCTGGTCCTGTCAAATTACCCCAGACAAACAGATGCTCTACACCAACCAGTTCACTCAAGAGCAGTGGGTAAGGTTGGAGGACCAGCACGGGAAGCCATATTTCTACAACCCAGAGGACTCCTCTGTTCAGTGGGAGCTACCCCAGGTCCCGATCCCTGCCCCCCGAAGTGTCCGCAAATCCAGCCAGGATAGCGACACTCCAGCCCAGGCTAGCCCTCCAGAGGAGAAGATCAAGACTCTGGACAAGGCAGGAGTCCTCCATCGTACCAAGACGGTAGACAAGGGGAAGAGACTTCGGAAGAAACACTGGAGCACCTCCTGGACAGTGTTGGAGGGCGGGGTCCTGACCTTCTTCAAGGACTCAAAGACCTCAGCTGCAGGCGGCCTGAGGCAGCCTTCCAAGCTCTCCACCCCTGAATACACAGTCGAACTGAAGGGGGCCTCTCTCTCTTGGGCCCCCAAAGACAAATCCAGCAAGAAGAATGTGTTAGAGGTGGACGACCCCCCGGAACCAGTGTATGCCAATGTAGAGAGGCAACCTCGGGCCACGTCGCCTCGCTCAGCTGCAGCTCCTCCTCGGCTCAGCCCAGTGTGGGAGACACACACAGACACGGGCACTGGGCGCCCCTACTACTACAACCCCGACACGGGCGTGACCACCTGGGAGTCACCCTTTGAAACACCTGAAGGCACCACCAGCCCGGCCACCTCCCGGGCCTCTGTGGGTAGCGGGGAGAGCCTGGAGACAGAGTGGGGCCAGTACTGGGATGAGGAGAGCCGCAGGGTCTTCTTCTACAACCCCTTGACCGGTGAGACGGCCTGGGAGGACGAGACCGAGGAGCTGGAGGAAGATCACCAGGAACAACTGGAAATGCAACCCAGCCTGAGCCCGCGAAGCCCCGGGCAGCAGAGGCCCCCAACTCCTGAAACAGACTACCCCGAATTACTGGCCAGTTACCCTGAAGAGGACTACTCTCCTGTGGGCTCCTTCAGTGATCCGGGCCCCGCTTCTCCTTTGGTTGCACCCCCTGGCTGGTCCTGTCAAATTACCCCAGACAAACAGATGCTCTACACCAACCAGTTCACTCAAGAGCAGTGGGTAAGGTTGGAGGACCAGCACGGGAAGCCATATTTCTACAACCCAGAGGACTCCTCTGTTCAGTGGGAGCTACCCCAGGTCCCGATCCCTGCCCCCCGAAGTGTCCGCAAATCCAGCCAGGATAGCGACACTCCAGCCCAGGCTAGCCCTCCAGAGGAGAAGATCAAGACTCTGGACAAGGCAGGAGTCCTCCATCGTACCAAGACGGTAGACAAGGGGAAGAGACTTCGGAAGAAACACTGGAGCACCTCCTGGACAGTGTTGGAGGGCGGGGTCCTGACCTTCTTCAAGGACTCAAAGACCTCAGCTGCAGGCGGCCTGAGGCAGCCTTCCAAGCTCTCCACCCCTGAATACACAGTCGAACTGAAGGGGGCCTCTCTCTCTTGGGCCCCCAAAGACAAATCCAGCAAGAAGAATGTGTTAGAG
Peptide sequence:
MQPSLSPRSPGQQRPPTPETDYPELLASYPEEDYSPVGSFSDPGPASPLVAPPGWSCQITPDKQMLYTNQFTQEQWVRLEDQHGKPYFYNPEDSSVQWELPQVPIPAPRSVRKSSQDSDTPAQASPPEEKIKTLDKAGVLHRTKTVDKGKRLRKKHWSTSWTVLEGGVLTFFKDSKTSAAGGLRQPSKLSTPEYTVELKGASLSWAPKDKSSKKNVLEVDDPPEPVYANVERQPRATSPRSAAAPPRLSPVWETHTDTGTGRPYYYNPDTGVTTWESPFETPEGTTSPATSRASVGSGESLETEWGQYWDEESRRVFFYNPLTGETAWEDETEELEEDHQEQLEMQPSLSPRSPGQQRPPTPETDYPELLASYPEEDYSPVGSFSDPGPASPLVAPPGWSCQITPDKQMLYTNQFTQEQWVRLEDQHGKPYFYNPEDSSVQWELPQVPIPAPRSVRKSSQDSDTPAQASPPEEKIKTLDKAGVLHRTKTVDKGKRLRKKHWSTSWTVLEGGVLTFFKDSKTSAAGGLRQPSKLSTPEYTVELKGASLSWAPKDKSSKKNVLE
IRESfinder result
IRESfinder score
0.509991363
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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