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mmu_circArhgap26_730
Basic information of circular RNA
PanCircBase ID:
mmu_circArhgap26_730
mm39_Chr. Position ID:
chr18|39338336|39429976|+
Gene name:
Arhgap26
Transcript:
ENSMUST00000097593.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
12,13,14,15,16,17,18,19
Exon/intron offsets:
0,22084,24607,38322,39999,41535,81243,91501
Genomic length:
91640
Exon/intron sizes in nt:
37,66,75,88,59,106,160,139
Flanking exon/introns:
chr18:39283171-39338336|chr18:39429976-39439754
Splice length:
730
Other database IDs:
circAtlas: mmu-Arhgap26_0115
circAtlas: hsa-ARHGAP26_0069
Human Ortholog IDs:
Mature spliced Sequence:
GTGTACAACTCCAACAGAGACAGCCAGAGCGAAGGGACCGCACAATTGGACAGTATCGGCTTCAGCATAATAAGGAAATGCATCCATGCGGTGGAGACCAGAGGGATCAATGAGCAGGGGCTCTACCGAATCGTGGGGGTCAACTCCAGGGTGCAGAAGTTGCTGAGCGTCCTGATGGACCCCAAAGCAGCTTCTGAGACAGAAACTGATATCTGTGCCGAATGGGAGATAAAGACCGTCACCAGTGCTCTGAAGACCTACCTGAGAATGCTCCCAGGACCCCTCATGATGTACCAGTTTCAAAGAAGTTTCATCAAAGCAGCAAAGCTGGAAAACCAAGAGACTCGAGTGTCTGAGATCCACAGTCTTGTCCATCGGCTCCCGGAGAAGAATCGGCAGATGTTGCAGCTGCTCATGAACCACCTGGCCAATGTTGCTAACAACCACAAGCAGAATCTGATGACTGTGGCAAACCTGGGCGTGGTGTTTGGACCCACCTTGCTTCGGCCTCAGGAAGAAACTGTGGCGGCCATCATGGACATCAAGTTTCAGAACATTGTCATCGAGATCTTAATCGAGAACCATGAGAAGATATTCAACACGGTGCCTGATGTGCCCCTCACCAACGCCCAGCTACACCTGTCCCGGAAGAAAAGCAGTGACTCCAAGCCCCCATCCTGCAGCAAGAGGCCCCTGACGCTCTTCCATGCTGTGCCATCCACAGAAAAAC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCTGTCCCGGAAGAAAAGCA
60.25
GCTGAAGCCGATACTGTCCA
59.82
158
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCTGTCCCGGAAGAAAAGCA
60.25
TGCTGAAGCCGATACTGTCC
59.82
159
PCR template sequence:
CAGCTACACCTGTCCCGGAAGAAAAGCAGTGACTCCAAGCCCCCATCCTGCAGCAAGAGGCCCCTGACGCTCTTCCATGCTGTGCCATCCACAGAAAAACGTGTACAACTCCAACAGAGACAGCCAGAGCGAAGGGACCGCACAATTGGACAGTATCGGCTTCAGCATAATAAGGAAATGCATCCATGCGGTGGAGACCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-433-3p(1), mmu-miR-183-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TCCACAGAAAAACGTGTACAACTCCA
siRNA sets
AGTTGTACACGTTTTTCTG, GTTGTACACGTTTTTCTGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCARHGAP26_730_ORF_1
1.3146
0.421874911
0.986955044
753
ORF sequence:
ATGCTGTGCCATCCACAGAAAAACGTGTACAACTCCAACAGAGACAGCCAGAGCGAAGGGACCGCACAATTGGACAGTATCGGCTTCAGCATAATAAGGAAATGCATCCATGCGGTGGAGACCAGAGGGATCAATGAGCAGGGGCTCTACCGAATCGTGGGGGTCAACTCCAGGGTGCAGAAGTTGCTGAGCGTCCTGATGGACCCCAAAGCAGCTTCTGAGACAGAAACTGATATCTGTGCCGAATGGGAGATAAAGACCGTCACCAGTGCTCTGAAGACCTACCTGAGAATGCTCCCAGGACCCCTCATGATGTACCAGTTTCAAAGAAGTTTCATCAAAGCAGCAAAGCTGGAAAACCAAGAGACTCGAGTGTCTGAGATCCACAGTCTTGTCCATCGGCTCCCGGAGAAGAATCGGCAGATGTTGCAGCTGCTCATGAACCACCTGGCCAATGTTGCTAACAACCACAAGCAGAATCTGATGACTGTGGCAAACCTGGGCGTGGTGTTTGGACCCACCTTGCTTCGGCCTCAGGAAGAAACTGTGGCGGCCATCATGGACATCAAGTTTCAGAACATTGTCATCGAGATCTTAATCGAGAACCATGAGAAGATATTCAACACGGTGCCTGATGTGCCCCTCACCAACGCCCAGCTACACCTGTCCCGGAAGAAAAGCAGTGACTCCAAGCCCCCATCCTGCAGCAAGAGGCCCCTGACGCTCTTCCATGCTGTGCCATCCACAGAAAAA
Peptide sequence:
MLCHPQKNVYNSNRDSQSEGTAQLDSIGFSIIRKCIHAVETRGINEQGLYRIVGVNSRVQKLLSVLMDPKAASETETDICAEWEIKTVTSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQETRVSEIHSLVHRLPEKNRQMLQLLMNHLANVANNHKQNLMTVANLGVVFGPTLLRPQEETVAAIMDIKFQNIVIEILIENHEKIFNTVPDVPLTNAQLHLSRKKSSDSKPPSCSKRPLTLFHAVPSTEK
IRESfinder result
IRESfinder score
0.398481084
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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