top of page
mmu_circArhgap26_552
Basic information of circular RNA
PanCircBase ID:
mmu_circArhgap26_552
mm39_Chr. Position ID:
chr18|39376658|39429976|+
Gene name:
Arhgap26
Transcript:
ENSMUST00000097593.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
15,16,17,18,19
Exon/intron offsets:
0,1677,3213,42921,53179
Genomic length:
53318
Exon/intron sizes in nt:
88,59,106,160,139
Flanking exon/introns:
chr18:39363018-39376658|chr18:39429976-39439754
Splice length:
552
Other database IDs:
circAtlas: mmu-Arhgap26_0030
circBase: hsa_circ_0074372, circAtlas: hsa-ARHGAP26_0022, CIRCpedia: HSA_CIRCpedia_50595
Human Ortholog IDs:
Mature spliced Sequence:
ACCCCAAAGCAGCTTCTGAGACAGAAACTGATATCTGTGCCGAATGGGAGATAAAGACCGTCACCAGTGCTCTGAAGACCTACCTGAGAATGCTCCCAGGACCCCTCATGATGTACCAGTTTCAAAGAAGTTTCATCAAAGCAGCAAAGCTGGAAAACCAAGAGACTCGAGTGTCTGAGATCCACAGTCTTGTCCATCGGCTCCCGGAGAAGAATCGGCAGATGTTGCAGCTGCTCATGAACCACCTGGCCAATGTTGCTAACAACCACAAGCAGAATCTGATGACTGTGGCAAACCTGGGCGTGGTGTTTGGACCCACCTTGCTTCGGCCTCAGGAAGAAACTGTGGCGGCCATCATGGACATCAAGTTTCAGAACATTGTCATCGAGATCTTAATCGAGAACCATGAGAAGATATTCAACACGGTGCCTGATGTGCCCCTCACCAACGCCCAGCTACACCTGTCCCGGAAGAAAAGCAGTGACTCCAAGCCCCCATCCTGCAGCAAGAGGCCCCTGACGCTCTTCCATGCTGTGCCATCCACAGAAAAAC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCTGTCCCGGAAGAAAAGCA
60.25
TCTTCAGAGCACTGGTGACG
59.68
170
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACCTGTCCCGGAAGAAAAGC
60.25
TCTTCAGAGCACTGGTGACG
59.68
171
PCR template sequence:
CAGCTACACCTGTCCCGGAAGAAAAGCAGTGACTCCAAGCCCCCATCCTGCAGCAAGAGGCCCCTGACGCTCTTCCATGCTGTGCCATCCACAGAAAAACACCCCAAAGCAGCTTCTGAGACAGAAACTGATATCTGTGCCGAATGGGAGATAAAGACCGTCACCAGTGCTCTGAAGACCTACCTGAGAATGCTCCCAGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-433-3p(1), mmu-miR-183-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TCCACAGAAAAACACCCCAAAGCAGC
siRNA sets
TTTGGGGTGTTTTTCTGTG, TTGGGGTGTTTTTCTGTGG, CTTTGGGGTGTTTTTCTGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCARHGAP26_552_ORF_1
1.2253
0.435004787
0.997774644
1014
ORF sequence:
ATGCTCCCAGGACCCCTCATGATGTACCAGTTTCAAAGAAGTTTCATCAAAGCAGCAAAGCTGGAAAACCAAGAGACTCGAGTGTCTGAGATCCACAGTCTTGTCCATCGGCTCCCGGAGAAGAATCGGCAGATGTTGCAGCTGCTCATGAACCACCTGGCCAATGTTGCTAACAACCACAAGCAGAATCTGATGACTGTGGCAAACCTGGGCGTGGTGTTTGGACCCACCTTGCTTCGGCCTCAGGAAGAAACTGTGGCGGCCATCATGGACATCAAGTTTCAGAACATTGTCATCGAGATCTTAATCGAGAACCATGAGAAGATATTCAACACGGTGCCTGATGTGCCCCTCACCAACGCCCAGCTACACCTGTCCCGGAAGAAAAGCAGTGACTCCAAGCCCCCATCCTGCAGCAAGAGGCCCCTGACGCTCTTCCATGCTGTGCCATCCACAGAAAAACACCCCAAAGCAGCTTCTGAGACAGAAACTGATATCTGTGCCGAATGGGAGATAAAGACCGTCACCAGTGCTCTGAAGACCTACCTGAGAATGCTCCCAGGACCCCTCATGATGTACCAGTTTCAAAGAAGTTTCATCAAAGCAGCAAAGCTGGAAAACCAAGAGACTCGAGTGTCTGAGATCCACAGTCTTGTCCATCGGCTCCCGGAGAAGAATCGGCAGATGTTGCAGCTGCTCATGAACCACCTGGCCAATGTTGCTAACAACCACAAGCAGAATCTGATGACTGTGGCAAACCTGGGCGTGGTGTTTGGACCCACCTTGCTTCGGCCTCAGGAAGAAACTGTGGCGGCCATCATGGACATCAAGTTTCAGAACATTGTCATCGAGATCTTAATCGAGAACCATGAGAAGATATTCAACACGGTGCCTGATGTGCCCCTCACCAACGCCCAGCTACACCTGTCCCGGAAGAAAAGCAGTGACTCCAAGCCCCCATCCTGCAGCAAGAGGCCCCTGACGCTCTTCCATGCTGTGCCATCCACAGAAAAA
Peptide sequence:
MLPGPLMMYQFQRSFIKAAKLENQETRVSEIHSLVHRLPEKNRQMLQLLMNHLANVANNHKQNLMTVANLGVVFGPTLLRPQEETVAAIMDIKFQNIVIEILIENHEKIFNTVPDVPLTNAQLHLSRKKSSDSKPPSCSKRPLTLFHAVPSTEKHPKAASETETDICAEWEIKTVTSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQETRVSEIHSLVHRLPEKNRQMLQLLMNHLANVANNHKQNLMTVANLGVVFGPTLLRPQEETVAAIMDIKFQNIVIEILIENHEKIFNTVPDVPLTNAQLHLSRKKSSDSKPPSCSKRPLTLFHAVPSTEK
IRESfinder result
IRESfinder score
0.45429317
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page