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mmu_circArhgap26_216
Basic information of circular RNA
PanCircBase ID:
mmu_circArhgap26_216
mm39_Chr. Position ID:
chr18|39244842|39253276|+
Gene name:
Arhgap26
Transcript:
ENSMUST00000097593.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
6,7
Exon/intron offsets:
0,8329
Genomic length:
8434
Exon/intron sizes in nt:
1,11,105
Flanking exon/introns:
chr18:39243609-39244842|chr18:39253276-39254826
Splice length:
216
Other database IDs:
CIRCpedia: MMU_CIRCpedia_36984, circAtlas: mmu-Arhgap26_0052
Human Ortholog IDs:
Mature spliced Sequence:
GCAGACAGCCAAGTGGACCTGGTTCGGCAACATTTCTACGAAGTATCCCTGGAGTATGTCTTTAAGGTGCAGGAAGTGCAAGAGAGAAAGATGTTTGAGTTTGTAGAGCCTCTGCTGGCCTTCCTGCAAGGACTCTTCACTTTCTATCACCATGGTTATGAGCTGGCCAAGGATTTTGGTGACTTTAAGACACAGTTGACCATCAGCATACAAAAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGTTATGAGCTGGCCAAGG
60.03
GCACTTCCTGCACCTTAAAGAC
59.77
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACCATGGTTATGAGCTGGCC
60.11
GCACTTCCTGCACCTTAAAGAC
59.77
147
PCR template sequence:
GGCCTTCCTGCAAGGACTCTTCACTTTCTATCACCATGGTTATGAGCTGGCCAAGGATTTTGGTGACTTTAAGACACAGTTGACCATCAGCATACAAAATGCAGACAGCCAAGTGGACCTGGTTCGGCAACATTTCTACGAAGTATCCCTGGAGTATGTCTTTAAGGTGCAGGAAGTGCAAGAGAGAAAGATGTTTGAGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-224-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CAGCATACAAAATGCAGACAGCCAAG
siRNA sets
TTGGCTGTCTGCATTTTGT,CTTGGCTGTCTGCATTTTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCARHGAP26_216_ORF_1
1.1771
0.307557701
0.659536548
342
ORF sequence:
ATGTTTGAGTTTGTAGAGCCTCTGCTGGCCTTCCTGCAAGGACTCTTCACTTTCTATCACCATGGTTATGAGCTGGCCAAGGATTTTGGTGACTTTAAGACACAGTTGACCATCAGCATACAAAATGCAGACAGCCAAGTGGACCTGGTTCGGCAACATTTCTACGAAGTATCCCTGGAGTATGTCTTTAAGGTGCAGGAAGTGCAAGAGAGAAAGATGTTTGAGTTTGTAGAGCCTCTGCTGGCCTTCCTGCAAGGACTCTTCACTTTCTATCACCATGGTTATGAGCTGGCCAAGGATTTTGGTGACTTTAAGACACAGTTGACCATCAGCATACAAAAT
Peptide sequence:
MFEFVEPLLAFLQGLFTFYHHGYELAKDFGDFKTQLTISIQNADSQVDLVRQHFYEVSLEYVFKVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFGDFKTQLTISIQN
IRESfinder result
IRESfinder score
0.593705575
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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