top of page
mmu_circArhgap15_764
Basic information of circular RNA
PanCircBase ID:
mmu_circArhgap15_764
mm39_Chr. Position ID:
chr2|43953773|44212793|+
Gene name:
Arhgap15
Transcript:
ENSMUST00000112824.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
7,8,9,10,11,12,13
Exon/intron offsets:
0,1222,52832,78488,112609,179343,258914
Genomic length:
259020
Exon/intron sizes in nt:
9,91,24,12,39,97,81,35,000
Flanking exon/introns:
chr2:43780529-43953773|chr2:44212793-44278363
Splice length:
764
Other database IDs:
CIRCpedia: HSA_CIRCpedia_150530
Human Ortholog IDs:
Mature spliced Sequence:
ATCACAACAGTGTCAGGAAATGAGTTCCTTCTACAGTCAGATATTGACTTCCTCATATTGGATTGGTTCCAAGCTATCAAAAATGCAATTGACAGATTGCCAAAGAATCCAAGTTGTGGGTCCCTGGAGTTGTTCAATTTGCAGAGATCCTCAAGTTCTGAACTGCCGAGTCACTGCCACATCGATAGAAAAGAACAGAAACCAGAACACAGGAAGTCCTTCATGTTTCGACTGCACCACAGTGCTTCTGATACAAGTGACAAGAATCGCGTGAAGAGCAGACTGAAGAAGTTCATCTCCAGAAGACCTTCTCTGAAAACTTTGCAGGAAAAGGGACTCATTAAAGATCAAATTTTTGGCTCTCATCTGCACACAGTGTGTGAACGAGAACATTCCACAGTTCCATGGTTTGTAAAGCAATGCATTGAAGCTGTTGAAAAAAGAGGCCTAGACGTTGATGGAATTTATCGAGTTAGTGGCAATCTTGCAACAATACAGAAGTTAAGATTTATTGTCAACCAAGAAGAGAAGCTGAATTTGGATGACAGCCAGTGGGAGGACATCCACGTCGTCACCGGAGCACTGAAGATGTTTTTCCGGGAGCTGTCTGAACCGCTCTTCCCTTACAGTTTCTTTGAGCGGTTTGTGGAGGCGATCAAAAAACAAGACAGCAATGAAAAAATTGAAACTATGAGGTCTCTGGTAAAACGTCTCCCTCCACCAAATCATGATACCATGAAAATCCTCTTCAGACATCTAACCAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGTCTCCCTCCACCAAATCA
59.39
TGCATTTTTGATAGCTTGGAACCA
59.72
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACGTCTCCCTCCACCAAATC
59.39
TGCATTTTTGATAGCTTGGAACCA
59.72
144
PCR template sequence:
AAGACAGCAATGAAAAAATTGAAACTATGAGGTCTCTGGTAAAACGTCTCCCTCCACCAAATCATGATACCATGAAAATCCTCTTCAGACATCTAACCAAATCACAACAGTGTCAGGAAATGAGTTCCTTCTACAGTCAGATATTGACTTCCTCATATTGGATTGGTTCCAAGCTATCAAAAATGCAATTGACAGATTGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-33-5p(1), mmu-miR-143-3p(1), mmu-miR-34b-5p(1), mmu-miR-335-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GACATCTAACCAAATCACAACAGTGT
siRNA sets
TTGTGATTTGGTTAGATGT,TGTGATTTGGTTAGATGTC,GTTGTGATTTGGTTAGATG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCARHGAP15_764_ORF_1
0.5254
0.071407108
0.867458337
816
ORF sequence:
ATGTTTCGACTGCACCACAGTGCTTCTGATACAAGTGACAAGAATCGCGTGAAGAGCAGACTGAAGAAGTTCATCTCCAGAAGACCTTCTCTGAAAACTTTGCAGGAAAAGGGACTCATTAAAGATCAAATTTTTGGCTCTCATCTGCACACAGTGTGTGAACGAGAACATTCCACAGTTCCATGGTTTGTAAAGCAATGCATTGAAGCTGTTGAAAAAAGAGGCCTAGACGTTGATGGAATTTATCGAGTTAGTGGCAATCTTGCAACAATACAGAAGTTAAGATTTATTGTCAACCAAGAAGAGAAGCTGAATTTGGATGACAGCCAGTGGGAGGACATCCACGTCGTCACCGGAGCACTGAAGATGTTTTTCCGGGAGCTGTCTGAACCGCTCTTCCCTTACAGTTTCTTTGAGCGGTTTGTGGAGGCGATCAAAAAACAAGACAGCAATGAAAAAATTGAAACTATGAGGTCTCTGGTAAAACGTCTCCCTCCACCAAATCATGATACCATGAAAATCCTCTTCAGACATCTAACCAAATCACAACAGTGTCAGGAAATGAGTTCCTTCTACAGTCAGATATTGACTTCCTCATATTGGATTGGTTCCAAGCTATCAAAAATGCAATTGACAGATTGCCAAAGAATCCAAGTTGTGGGTCCCTGGAGTTGTTCAATTTGCAGAGATCCTCAAGTTCTGAACTGCCGAGTCACTGCCACATCGATAGAAAAGAACAGAAACCAGAACACAGGAAGTCCTTCATGTTTCGACTGCACCACAGTGCTTCTGATACAAGTGACAAGAATCGCGTGA
Peptide sequence:
MFRLHHSASDTSDKNRVKSRLKKFISRRPSLKTLQEKGLIKDQIFGSHLHTVCEREHSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELSEPLFPYSFFERFVEAIKKQDSNEKIETMRSLVKRLPPPNHDTMKILFRHLTKSQQCQEMSSFYSQILTSSYWIGSKLSKMQLTDCQRIQVVGPWSCSICRDPQVLNCRVTATSIEKNRNQNTGSPSCFDCTTVLLIQVTRIA
IRESfinder result
IRESfinder score
0.691360885
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page