top of page
mmu_circArhgap12_792
Basic information of circular RNA
PanCircBase ID:
mmu_circArhgap12_792
mm39_Chr. Position ID:
chr18|6111684|6115850|-
Gene name:
Arhgap12
Transcript:
ENSMUST00000077128.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
3,2
Exon/intron offsets:
0,4129
Genomic length:
4166
Exon/intron sizes in nt:
755,37
Flanking exon/introns:
chr18:6070091-6111684|chr18:6115850-6135803
Splice length:
792
Other database IDs:
circBase: mmu_circ_0000840, CIRCpedia: MMU_CIRCpedia_25033, circAtlas: mmu-Arhgap12_0022
circBase: hsa_circ_0000231, circAtlas: hsa-ARHGAP12_0031, CIRCpedia: HSA_CIRCpedia_1491
Human Ortholog IDs:
Mature spliced Sequence:
GTTTAAATGAAACACCAGATGTTTACAGCCTTCCAAGTGTTATATTAATGCATCGAGGCACAAGGCATAATGTGGCATGCTATCTGTTTTGAGAGTGAGTATTACTGAGTAGAAATGGCCGAGAGAAGTGGAAAGATCACTGCAGGACAAGCGTATATTGAGGTGGAGTATGATTATGAGTATGACGCAAAGGACAGAAAGATTGTGATCAGACAAGGGGAGCGCTACCTCCTGGTGAAGAAGACCAATGATGACTGGTGGCAAGTCAGACCTGATGAGAACTCAAAAGCATTTTATGTGCCAGCACAGTATGTCAAGGAGGTCACTCGCAAAGCTCTGATGCCACCTGTGAAGCAGGCAACAGGACTGCCAAATAACTCTATGAAGACAATACAGAGTATGCATCTCCAGAGATCGACAGAAAATGTGAACAAAATGCCTGAGCTTTCAAGTTTTGGAAAGCCATCGTCATCTGTTCAAGGAACAGGTCTTATTCGTGATGCCAATCAGAATTTCGGATCCAATTATAATTCAGGCCAGACTCTCAACCTAAGCCTGGACCTGACCCATAATAATGGAAAGTTTAACAGTGACTCACATTCTCCTAAAGTTTCCAGCCAGAATAGGACACGCTTATTTGGTCATTTTCCCGGGCCAGAGTTCTTGGACATAGAGAAAACTAGCTTCTCTCAGGAACAGTCATGTGACTCAGCTGGAGAAGGCTCCGAAAGAATACAGCAGGATTCCGAGTCTGGAGATGAACTTAGCAGCAGCTCCACTGAGCAGATGAGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGGCTCCGAAAGAATACAGCA
59.44
GCCACATTATGCCTTGTGCC
60.18
149
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGGCTCCGAAAGAATACAGCA
59.44
TGCCACATTATGCCTTGTGC
59.47
150
PCR template sequence:
GGAACAGTCATGTGACTCAGCTGGAGAAGGCTCCGAAAGAATACAGCAGGATTCCGAGTCTGGAGATGAACTTAGCAGCAGCTCCACTGAGCAGATGAGGGTTTAAATGAAACACCAGATGTTTACAGCCTTCCAAGTGTTATATTAATGCATCGAGGCACAAGGCATAATGTGGCATGCTATCTGTTTTGAGAGTGAGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-miR-135a-5p(1), mmu-miR-30e-5p(1), mmu-miR-30a-5p(1), mmu-miR-30c-5p(1), mmu-miR-23a-3p(1), mmu-miR-30d-5p(1), mmu-miR-30b-5p(1), mmu-miR-410-3p(1), mmu-miR-344d-3p(1), mmu-miR-532-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TGAGCAGATGAGGGTTTAAATGAAAC
siRNA sets
TTTAAACCCTCATCTGCTC, TTAAACCCTCATCTGCTCA, TTTCATTTAAACCCTCATC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCARHGAP12_792_ORF_1
0.9255
0.195218501
0.897990154
684
ORF sequence:
ATGGCCGAGAGAAGTGGAAAGATCACTGCAGGACAAGCGTATATTGAGGTGGAGTATGATTATGAGTATGACGCAAAGGACAGAAAGATTGTGATCAGACAAGGGGAGCGCTACCTCCTGGTGAAGAAGACCAATGATGACTGGTGGCAAGTCAGACCTGATGAGAACTCAAAAGCATTTTATGTGCCAGCACAGTATGTCAAGGAGGTCACTCGCAAAGCTCTGATGCCACCTGTGAAGCAGGCAACAGGACTGCCAAATAACTCTATGAAGACAATACAGAGTATGCATCTCCAGAGATCGACAGAAAATGTGAACAAAATGCCTGAGCTTTCAAGTTTTGGAAAGCCATCGTCATCTGTTCAAGGAACAGGTCTTATTCGTGATGCCAATCAGAATTTCGGATCCAATTATAATTCAGGCCAGACTCTCAACCTAAGCCTGGACCTGACCCATAATAATGGAAAGTTTAACAGTGACTCACATTCTCCTAAAGTTTCCAGCCAGAATAGGACACGCTTATTTGGTCATTTTCCCGGGCCAGAGTTCTTGGACATAGAGAAAACTAGCTTCTCTCAGGAACAGTCATGTGACTCAGCTGGAGAAGGCTCCGAAAGAATACAGCAGGATTCCGAGTCTGGAGATGAACTTAGCAGCAGCTCCACTGAGCAGATGAGGGTTTAA
Peptide sequence:
MAERSGKITAGQAYIEVEYDYEYDAKDRKIVIRQGERYLLVKKTNDDWWQVRPDENSKAFYVPAQYVKEVTRKALMPPVKQATGLPNNSMKTIQSMHLQRSTENVNKMPELSSFGKPSSSVQGTGLIRDANQNFGSNYNSGQTLNLSLDLTHNNGKFNSDSHSPKVSSQNRTRLFGHFPGPEFLDIEKTSFSQEQSCDSAGEGSERIQQDSESGDELSSSSTEQMRV
IRESfinder result
IRESfinder score
0.454966942
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page