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mmu_circArhgap10_636
Basic information of circular RNA
PanCircBase ID:
mmu_circArhgap10_636
mm39_Chr. Position ID:
chr8|78003776|78078301|-
Gene name:
Arhgap10
Transcript:
ENSMUST00000076316.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
20,19,18,17,16
Exon/intron offsets:
0,33583,67492,69124,74466
Genomic length:
74525
Exon/intron sizes in nt:
160,151,160,106,59
Flanking exon/introns:
chr8:77985838-78003776|chr8:78078301-78085175
Splice length:
636
Other database IDs:
CIRCpedia: MMU_CIRCpedia_29600, circAtlas: mmu-Arhgap10_0043
circAtlas: hsa-ARHGAP10_0079
Human Ortholog IDs:
Mature spliced Sequence:
GAGTCTTCCAGAGCCTCTCATGACCTATGAGTTACACAGAGACTTCATTGTTCCAGCCAAGAGCGGCAGCCCGGAATCCCGAGTTAATGCCATCCACTTCTTGGTACACAAACTGCCAGAGAAGAATAAGGAGATGTTGGATATCTTGGTGAAGCATCTAACCAACGTGTCAAGTCACTCGAAGCAGAATCTAATGACAGTGGCGAATTTAGGGGTGGTGTTTGGACCAACTCTGATGAGACCACAGGAAGAGACTGTTGCCGCCATCATGGATTTGAAGTTTCAGAATATCGTTGTAGAAATCTTAATTGAAAACCATGAAAAGATTTTTCGAACCTCGCCTGATACCACATTTGCTGAGCCCACATGCCTGTCAGCATCACCCCCAAACGCTCCACCACGACAGTCCAAGAGACAAGGGCAGAGGACGAAGAGACCAGTGGCCGTGTACAACCTTTGTCTTGAGCTGGAGGAGGGTGACAGTCCCAGCCCTCTCAAGGAGGACCCCCCCAGCAGCAGTCAGGACTCTCTCTCCACCCCATCTCCCACAACGTCAGCTGCCCATGGGCCTCCTGGACTAGACGGAAACCACCTAGCAGCAGACGGAGGGAGCTGTGGAGATGCCACCGCCACCAC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATCTCCCACAACGTCAGCTG
60.04
CGCTCTTGGCTGGAACAATG
59.83
161
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CATCTCCCACAACGTCAGCT
60.04
CGCTCTTGGCTGGAACAATG
59.83
162
PCR template sequence:
CCCCATCTCCCACAACGTCAGCTGCCCATGGGCCTCCTGGACTAGACGGAAACCACCTAGCAGCAGACGGAGGGAGCTGTGGAGATGCCACCGCCACCACGAGTCTTCCAGAGCCTCTCATGACCTATGAGTTACACAGAGACTTCATTGTTCCAGCCAAGAGCGGCAGCCCGGAATCCCGAGTTAATGCCATCCACTTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-132-3p(1), mmu-miR-212-3p(1), mmu-miR-705(1)
siRNAs for circular RNA silencing
Junction sequence
CCACCGCCACCACGAGTCTTCCAGAG
siRNA sets
CTGGAAGACTCGTGGTGGC,TCTGGAAGACTCGTGGTGG,CTCTGGAAGACTCGTGGTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCARHGAP10_636_ORF_1
1.0937
0.250642664
0.998902309
1251
ORF sequence:
ATGACCTATGAGTTACACAGAGACTTCATTGTTCCAGCCAAGAGCGGCAGCCCGGAATCCCGAGTTAATGCCATCCACTTCTTGGTACACAAACTGCCAGAGAAGAATAAGGAGATGTTGGATATCTTGGTGAAGCATCTAACCAACGTGTCAAGTCACTCGAAGCAGAATCTAATGACAGTGGCGAATTTAGGGGTGGTGTTTGGACCAACTCTGATGAGACCACAGGAAGAGACTGTTGCCGCCATCATGGATTTGAAGTTTCAGAATATCGTTGTAGAAATCTTAATTGAAAACCATGAAAAGATTTTTCGAACCTCGCCTGATACCACATTTGCTGAGCCCACATGCCTGTCAGCATCACCCCCAAACGCTCCACCACGACAGTCCAAGAGACAAGGGCAGAGGACGAAGAGACCAGTGGCCGTGTACAACCTTTGTCTTGAGCTGGAGGAGGGTGACAGTCCCAGCCCTCTCAAGGAGGACCCCCCCAGCAGCAGTCAGGACTCTCTCTCCACCCCATCTCCCACAACGTCAGCTGCCCATGGGCCTCCTGGACTAGACGGAAACCACCTAGCAGCAGACGGAGGGAGCTGTGGAGATGCCACCGCCACCACGAGTCTTCCAGAGCCTCTCATGACCTATGAGTTACACAGAGACTTCATTGTTCCAGCCAAGAGCGGCAGCCCGGAATCCCGAGTTAATGCCATCCACTTCTTGGTACACAAACTGCCAGAGAAGAATAAGGAGATGTTGGATATCTTGGTGAAGCATCTAACCAACGTGTCAAGTCACTCGAAGCAGAATCTAATGACAGTGGCGAATTTAGGGGTGGTGTTTGGACCAACTCTGATGAGACCACAGGAAGAGACTGTTGCCGCCATCATGGATTTGAAGTTTCAGAATATCGTTGTAGAAATCTTAATTGAAAACCATGAAAAGATTTTTCGAACCTCGCCTGATACCACATTTGCTGAGCCCACATGCCTGTCAGCATCACCCCCAAACGCTCCACCACGACAGTCCAAGAGACAAGGGCAGAGGACGAAGAGACCAGTGGCCGTGTACAACCTTTGTCTTGAGCTGGAGGAGGGTGACAGTCCCAGCCCTCTCAAGGAGGACCCCCCCAGCAGCAGTCAGGACTCTCTCTCCACCCCATCTCCCACAACGTCAGCTGCCCATGGGCCTCCTGGACTAGACGGAAACCACCTAGCAGCAGACGGAGGGAGCTGTGGAGATGCCACCGCCACC
Peptide sequence:
MTYELHRDFIVPAKSGSPESRVNAIHFLVHKLPEKNKEMLDILVKHLTNVSSHSKQNLMTVANLGVVFGPTLMRPQEETVAAIMDLKFQNIVVEILIENHEKIFRTSPDTTFAEPTCLSASPPNAPPRQSKRQGQRTKRPVAVYNLCLELEEGDSPSPLKEDPPSSSQDSLSTPSPTTSAAHGPPGLDGNHLAADGGSCGDATATTSLPEPLMTYELHRDFIVPAKSGSPESRVNAIHFLVHKLPEKNKEMLDILVKHLTNVSSHSKQNLMTVANLGVVFGPTLMRPQEETVAAIMDLKFQNIVVEILIENHEKIFRTSPDTTFAEPTCLSASPPNAPPRQSKRQGQRTKRPVAVYNLCLELEEGDSPSPLKEDPPSSSQDSLSTPSPTTSAAHGPPGLDGNHLAADGGSCGDATAT
IRESfinder result
IRESfinder score
0.451361707
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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