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mmu_circArhgap10_332_2
Basic information of circular RNA
PanCircBase ID:
mmu_circArhgap10_332_2
mm39_Chr. Position ID:
chr8|78152958|78177552|-
Gene name:
Arhgap10
Transcript:
ENSMUST00000076316.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
5,4,3,2
Exon/intron offsets:
0,6410,24363,24498
Genomic length:
24594
Exon/intron sizes in nt:
102,72,62,96
Flanking exon/introns:
chr8:78147376-78152958|chr8:78177552-78244258
Splice length:
332
Other database IDs:
circAtlas: mmu-Arhgap10_0076
circBase: hsa_circ_0125472, circAtlas: hsa-ARHGAP10_0069, CIRCpedia: HSA_CIRCpedia_169768
Human Ortholog IDs:
Mature spliced Sequence:
GTCTGTCAGCTGCCCAGAGGAAGTTCGCTCACTCGCTCAGAGACTTCAAGTTCGAGTTTATCGGCGATGCTGAGACTGACGATGAACGGTGCATAGATGCCTCCTTACGGGAATTTTCTAACTTTCTGAAGAATCTGGAAGAACAGAGAGAAATCATGGCATTAAGTGTGACTGAAACCCTGATTAAACCCTTGGAGAAATTCAGAAAAGAGCAGCTTGGAGCTGTAAAGGAAGAAAAAAAGAAGTTTGACAAAGAGACGGAAAAGAATTACAGTCTCATCGACAAGCACTTGACGCTGTCTGCCAGGAAGAAGGACTCACACTTGCAGGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACAAGCACTTGACGCTGTCT
60.18
ATGCACCGTTCATCGTCAGT
60.04
144
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GACAAGCACTTGACGCTGTC
59.77
ATGCACCGTTCATCGTCAGT
60.04
145
PCR template sequence:
AGAAAAAAAGAAGTTTGACAAAGAGACGGAAAAGAATTACAGTCTCATCGACAAGCACTTGACGCTGTCTGCCAGGAAGAAGGACTCACACTTGCAGGAGGTCTGTCAGCTGCCCAGAGGAAGTTCGCTCACTCGCTCAGAGACTTCAAGTTCGAGTTTATCGGCGATGCTGAGACTGACGATGAACGGTGCATAGATGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
ACACTTGCAGGAGGTCTGTCAGCTGC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCARHGAP10_332_2_ORF_1
0.9667
0.197085021
0.335129703
273
ORF sequence:
ATGGCATTAAGTGTGACTGAAACCCTGATTAAACCCTTGGAGAAATTCAGAAAAGAGCAGCTTGGAGCTGTAAAGGAAGAAAAAAAGAAGTTTGACAAAGAGACGGAAAAGAATTACAGTCTCATCGACAAGCACTTGACGCTGTCTGCCAGGAAGAAGGACTCACACTTGCAGGAGGTCTGTCAGCTGCCCAGAGGAAGTTCGCTCACTCGCTCAGAGACTTCAAGTTCGAGTTTATCGGCGATGCTGAGACTGACGATGAACGGTGCATAG
Peptide sequence:
MALSVTETLIKPLEKFRKEQLGAVKEEKKKFDKETEKNYSLIDKHLTLSARKKDSHLQEVCQLPRGSSLTRSETSSSSLSAMLRLTMNGA
IRESfinder result
IRESfinder score
0.469570999
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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