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mmu_circAppl2_218
Basic information of circular RNA
PanCircBase ID:
mmu_circAppl2_218
mm39_Chr. Position ID:
chr10|83463188|83464164|-
Gene name:
Appl2
Transcript:
ENSMUST00000150685.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
5,4
Exon/intron offsets:
0,904
Genomic length:
976
Exon/intron sizes in nt:
146,72
Flanking exon/introns:
chr10:83460570-83463188|chr10:83464164-83464637
Splice length:
218
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
AATTTTGCACTGGGCAAAGGCGATGAAGAAGTAATTTCAACACTACATTATTTTTCCAAAGTGATGGATGAGAGCTCCAGTACTGCTGGTACCAAGAGACCCTTCTGCAATACTGGAAGTATAATAAACTCCAGCTTTTAAAGACTGAGCAGTGTGACTGCCGTAGGAAACGTGGAGAATGCAGGAAAGAGCGTGCAGCGACCAGGCCCTGAGCCAGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGTAGGAAACGTGGAGAATGC
59.34
GCAGTACTGGAGCTCTCATCC
59.93
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGAAACGTGGAGAATGCAGGA
60.61
CAGCAGTACTGGAGCTCTCA
58.82
141
PCR template sequence:
GTATAATAAACTCCAGCTTTTAAAGACTGAGCAGTGTGACTGCCGTAGGAAACGTGGAGAATGCAGGAAAGAGCGTGCAGCGACCAGGCCCTGAGCCAGGAATTTTGCACTGGGCAAAGGCGATGAAGAAGTAATTTCAACACTACATTATTTTTCCAAAGTGATGGATGAGAGCTCCAGTACTGCTGGTACCAAGAGAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-320-3p(1), mmu-miR-149-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GCCCTGAGCCAGGAATTTTGCACTGG
siRNA sets
CAGTGCAAAATTCCTGGCT, AGTGCAAAATTCCTGGCTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.538950659
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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