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mmu_circAp4e1_900
Basic information of circular RNA
PanCircBase ID:
mmu_circAp4e1_900
mm39_Chr. Position ID:
chr2|126885566|126894214|+
Gene name:
Ap4e1
Transcript:
ENSMUST00000002063.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
10,11,12,13,14,15
Exon/intron offsets:
0,2501,3199,3396,5613,8533
Genomic length:
8648
Exon/intron sizes in nt:
110,140,113,119,303,115
Flanking exon/introns:
chr2:126885463-126885566|chr2:126894214-126898100
Splice length:
900
Other database IDs:
CIRCpedia: HSA_CIRCpedia_67513
Human Ortholog IDs:
Mature spliced Sequence:
GACTGAAGGCTCTTACCTATGTTATCCAGCAGGATCCTTCTCTGGCTCTTCAACACCAGATAACCATAATTGAATGCCTAGACCACCCTGATCCCATTATTAAAAGAGAGACTCTGGAACTTCTTTACAGAATTACAAATGCACAGAATGTAGTGGTTATTGTACAGAAAATGCTTGAATACTTACATCAGAGCAAAGAAGAGCATATCATCATCAGTTTAGTTGGCAGAATTGCTGAGCTGGCTGAGAAATATGCTCCTGACAACGTGTGGTTTATTCAGACAATGAATGCTGTGTTTTCAGTGGGAGGAGATGTAATGCATCCAGATATTCTCAGCAACTTCCTGAGACTGCTAGCAGAAGGTTTTGATGATGAAACAGAAGATCAACAATTAAGACTCTACGCAGTTCAGTCTTATCTTACTTTACTAGATATGGAAAATACTTTCTATCCACAGAGATTTCTTCAAGTTATGAGTTGGGTGTTAGGAGAGTACTCCTACCTCTTAGATAAAGAAAGTCCAGAGGAGGTTATAACCAGGCTCTACAAGTTACTTATGAGTGACTCCATTTCTTCAGAAACGAAAGCATGGTTGTTTGCTGCGGTAACCAAGTTGACACCTCAAGCTCATTCTTCTCCCTTAGTTGAGAAATTAATCCAAGAATTCACTGTATCCTTGAATACTTGTCTGAGACAGCATGCATTTGAATTGAAACATCTGCATGAAAATACAGAGCTTATGAAGAGCCTGCTTCAGGGTGCTCAGAATTGTGAAGACATAGTGGCAGATGCGTCTTTATCTTTTCTGGATGGTTTTGTGGCTGAAGGACTCAGTCAGGGAGCAGCACCTTATAAGCCCCATCACCAGCGCCAAGAGGAACAGCTCTCTCAGGAAAAGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCAGCACCTTATAAGCCCCA
60.11
TGGGATCAGGGTGGTCTAGG
60.03
154
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGGACTCAGTCAGGGAGCA
60.18
TGGGATCAGGGTGGTCTAGG
60.03
171
PCR template sequence:
TCTTTTCTGGATGGTTTTGTGGCTGAAGGACTCAGTCAGGGAGCAGCACCTTATAAGCCCCATCACCAGCGCCAAGAGGAACAGCTCTCTCAGGAAAAGGGACTGAAGGCTCTTACCTATGTTATCCAGCAGGATCCTTCTCTGGCTCTTCAACACCAGATAACCATAATTGAATGCCTAGACCACCCTGATCCCATTAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-let-7e-5p(1), mmu-miR-26a-5p(1), mmu-miR-138-5p(1), mmu-miR-434-5p(1), mmu-miR-26b-5p(1), mmu-miR-1199-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TCTCAGGAAAAGGGACTGAAGGCTCT
siRNA sets
AGCCTTCAGTCCCTTTTCC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCAP4E1_900_ORF_1
1.0936
0.042753735
0.999829864
1629
ORF sequence:
ATGCTTGAATACTTACATCAGAGCAAAGAAGAGCATATCATCATCAGTTTAGTTGGCAGAATTGCTGAGCTGGCTGAGAAATATGCTCCTGACAACGTGTGGTTTATTCAGACAATGAATGCTGTGTTTTCAGTGGGAGGAGATGTAATGCATCCAGATATTCTCAGCAACTTCCTGAGACTGCTAGCAGAAGGTTTTGATGATGAAACAGAAGATCAACAATTAAGACTCTACGCAGTTCAGTCTTATCTTACTTTACTAGATATGGAAAATACTTTCTATCCACAGAGATTTCTTCAAGTTATGAGTTGGGTGTTAGGAGAGTACTCCTACCTCTTAGATAAAGAAAGTCCAGAGGAGGTTATAACCAGGCTCTACAAGTTACTTATGAGTGACTCCATTTCTTCAGAAACGAAAGCATGGTTGTTTGCTGCGGTAACCAAGTTGACACCTCAAGCTCATTCTTCTCCCTTAGTTGAGAAATTAATCCAAGAATTCACTGTATCCTTGAATACTTGTCTGAGACAGCATGCATTTGAATTGAAACATCTGCATGAAAATACAGAGCTTATGAAGAGCCTGCTTCAGGGTGCTCAGAATTGTGAAGACATAGTGGCAGATGCGTCTTTATCTTTTCTGGATGGTTTTGTGGCTGAAGGACTCAGTCAGGGAGCAGCACCTTATAAGCCCCATCACCAGCGCCAAGAGGAACAGCTCTCTCAGGAAAAGGGACTGAAGGCTCTTACCTATGTTATCCAGCAGGATCCTTCTCTGGCTCTTCAACACCAGATAACCATAATTGAATGCCTAGACCACCCTGATCCCATTATTAAAAGAGAGACTCTGGAACTTCTTTACAGAATTACAAATGCACAGAATGTAGTGGTTATTGTACAGAAAATGCTTGAATACTTACATCAGAGCAAAGAAGAGCATATCATCATCAGTTTAGTTGGCAGAATTGCTGAGCTGGCTGAGAAATATGCTCCTGACAACGTGTGGTTTATTCAGACAATGAATGCTGTGTTTTCAGTGGGAGGAGATGTAATGCATCCAGATATTCTCAGCAACTTCCTGAGACTGCTAGCAGAAGGTTTTGATGATGAAACAGAAGATCAACAATTAAGACTCTACGCAGTTCAGTCTTATCTTACTTTACTAGATATGGAAAATACTTTCTATCCACAGAGATTTCTTCAAGTTATGAGTTGGGTGTTAGGAGAGTACTCCTACCTCTTAGATAAAGAAAGTCCAGAGGAGGTTATAACCAGGCTCTACAAGTTACTTATGAGTGACTCCATTTCTTCAGAAACGAAAGCATGGTTGTTTGCTGCGGTAACCAAGTTGACACCTCAAGCTCATTCTTCTCCCTTAGTTGAGAAATTAATCCAAGAATTCACTGTATCCTTGAATACTTGTCTGAGACAGCATGCATTTGAATTGAAACATCTGCATGAAAATACAGAGCTTATGAAGAGCCTGCTTCAGGGTGCTCAGAATTGTGAAGACATAGTGGCAGATGCGTCTTTATCTTTTCTGGATGGTTTTGTGGCTGAAGGACTCAGTCAGGGAGCAGCACCTTATAAGCCCCATCACCAGCGCCAAGAGGAACAGCTCTCTCAGGAAAAG
Peptide sequence:
MLEYLHQSKEEHIIISLVGRIAELAEKYAPDNVWFIQTMNAVFSVGGDVMHPDILSNFLRLLAEGFDDETEDQQLRLYAVQSYLTLLDMENTFYPQRFLQVMSWVLGEYSYLLDKESPEEVITRLYKLLMSDSISSETKAWLFAAVTKLTPQAHSSPLVEKLIQEFTVSLNTCLRQHAFELKHLHENTELMKSLLQGAQNCEDIVADASLSFLDGFVAEGLSQGAAPYKPHHQRQEEQLSQEKGLKALTYVIQQDPSLALQHQITIIECLDHPDPIIKRETLELLYRITNAQNVVVIVQKMLEYLHQSKEEHIIISLVGRIAELAEKYAPDNVWFIQTMNAVFSVGGDVMHPDILSNFLRLLAEGFDDETEDQQLRLYAVQSYLTLLDMENTFYPQRFLQVMSWVLGEYSYLLDKESPEEVITRLYKLLMSDSISSETKAWLFAAVTKLTPQAHSSPLVEKLIQEFTVSLNTCLRQHAFELKHLHENTELMKSLLQGAQNCEDIVADASLSFLDGFVAEGLSQGAAPYKPHHQRQEEQLSQEK
IRESfinder result
IRESfinder score
0.802428643
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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