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mmu_circAp3m1_342
Basic information of circular RNA
PanCircBase ID:
mmu_circAp3m1_342
mm39_Chr. Position ID:
chr14|21088045|21089329|-
Gene name:
Ap3m1
Transcript:
ENSMUST00000154460.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
7,6
Exon/intron offsets:
0,1150
Genomic length:
1284
Exon/intron sizes in nt:
2,08,134
Flanking exon/introns:
chr14:21087325-21088045|chr14:21089329-21090119
Splice length:
342
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
AACCCAAGGCTACTAGATGACGTCAGCTTCCACCCATGCATCCGATTCAAACGCTGGGAGTCTGAAAGAGTTTTGTCATTCATTCCTCCAGATGGAAATTTCCGACTCATATCGTATCGTGTCAGCTCACAAAATCTAGTGGCAATACCAGTGTATGTGAAACACAGTATCAGCTTTAAGGAAAACAGCTCTTGTGGCCGGTTTGATATAACAATTGGACCGAAACAGAATATGGGAAAAACAATTGAAGGAATCACAGTGACTGTTCACATGCCCAAAGTTGTGCTGAATATGAACCTGACACCAACGCAAGGCAGCTATACATTTGATCCCGTGACCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCACATGCCCAAAGTTGTGC
59.61
CTCTTTCAGACTCCCAGCGT
59.39
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCACATGCCCAAAGTTGTGC
59.61
ACTCTTTCAGACTCCCAGCG
59.39
147
PCR template sequence:
AATTGAAGGAATCACAGTGACTGTTCACATGCCCAAAGTTGTGCTGAATATGAACCTGACACCAACGCAAGGCAGCTATACATTTGATCCCGTGACCAAGAACCCAAGGCTACTAGATGACGTCAGCTTCCACCCATGCATCCGATTCAAACGCTGGGAGTCTGAAAGAGTTTTGTCATTCATTCCTCCAGATGGAAATT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-224-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TCCCGTGACCAAGAACCCAAGGCTAC
siRNA sets
CTTGGGTTCTTGGTCACGG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCAP3M1_342_ORF_1
0.8342
0.164900446
0.558578823
453
ORF sequence:
ATGGGAAAAACAATTGAAGGAATCACAGTGACTGTTCACATGCCCAAAGTTGTGCTGAATATGAACCTGACACCAACGCAAGGCAGCTATACATTTGATCCCGTGACCAAGAACCCAAGGCTACTAGATGACGTCAGCTTCCACCCATGCATCCGATTCAAACGCTGGGAGTCTGAAAGAGTTTTGTCATTCATTCCTCCAGATGGAAATTTCCGACTCATATCGTATCGTGTCAGCTCACAAAATCTAGTGGCAATACCAGTGTATGTGAAACACAGTATCAGCTTTAAGGAAAACAGCTCTTGTGGCCGGTTTGATATAACAATTGGACCGAAACAGAATATGGGAAAAACAATTGAAGGAATCACAGTGACTGTTCACATGCCCAAAGTTGTGCTGAATATGAACCTGACACCAACGCAAGGCAGCTATACATTTGATCCCGTGACCAAG
Peptide sequence:
MGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKNPRLLDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQNMGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTK
IRESfinder result
IRESfinder score
0.550100913
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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