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mmu_circAp3b2_857
Basic information of circular RNA
PanCircBase ID:
mmu_circAp3b2_857
mm39_Chr. Position ID:
chr7|81123134|81127402|-
Gene name:
Ap3b2
Transcript:
ENSMUST00000082090.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
12,11,10,9,8,7,6
Exon/intron offsets:
0,470,2893,3354,3559,3929,4201
Genomic length:
4268
Exon/intron sizes in nt:
133,63,72,55,284,183,67
Flanking exon/introns:
chr7:81122857-81123134|chr7:81127402-81127653
Splice length:
857
Other database IDs:
CIRCpedia: MMU_CIRCpedia_214660, circAtlas: mmu-Ap3b2_0005
Human Ortholog IDs:
Mature spliced Sequence:
TTTGGACTCCGATCAGAAGGACCAGCTGATAGAAGTCATTGAGAAGCTTTTGGCAGATAAGACCACGCTGGTGGCAGGCAGTGTAGTGATGGCCTTTGAAGAGGTATGTCCAGAACGTATTGACCTGATTCACAAAAACTACCGGAAGCTCTGCAACCTGCTCATTGATGTGGAGGAGTGGGGCCAGGTGGTGATTATCAGCATGCTCACGCGTTATGCGCGAACGCAATTCCTGAGCCCTACGCAGAATGAGTCCTTGCTGGAGGAGAATCCCGAGAAGGCCTTCTATGGCTCCGAGGAGGACGAGGCCAAAGGCCCTGGATCAGAGGAGGCAGCCACTGCGGCGCTGCCCGCTCGGAAGCCCTATGTAATGGACCCAGATCACCGGCTGCTGCTGCGGAACACCAAGCCCCTGCTGCAGAGCCGCAGCGCCGCGGTGGTCATGGCGGTGGCGCAGCTTTACTTCCACCTAGCGCCTAAGGCAGAGGTGGGCGTCATCGCCAAGGCGCTGGTACGCCTGCTGCGCAGCCACAGTGAGGTGCAGTACGTAGTGCTCCAGAACGTGGCCACCATGTCCATCAAGCGCAGGGGTATGTTTGAACCCTACCTGAAGAGCTTCTACATTAGGTCCACGGATCCTACCCAGATCAAGATCCTGAAGCTGGAAGTGCTGACCAACCTGGCCAATGAGACTAACATCCCCACTGTTCTCCGGGAATTCCAGACCTACATTCGCAGCATGGACAAAGACTTTGTGGCAGCCACGATCCAGGCCATTGGACGATGTGCAACGAACATAGGCCGAGTCCGTGACACCTGTCTCAATGGCTTGGTGCAGCTTCTGTCCAACCGTGACG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AACGAACATAGGCCGAGTCC
59.82
AAGGCCATCACTACACTGCC
60.04
164
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AACGAACATAGGCCGAGTCC
59.82
ATCACTACACTGCCTGCCAC
60.04
158
PCR template sequence:
GCAGCCACGATCCAGGCCATTGGACGATGTGCAACGAACATAGGCCGAGTCCGTGACACCTGTCTCAATGGCTTGGTGCAGCTTCTGTCCAACCGTGACGTTTGGACTCCGATCAGAAGGACCAGCTGATAGAAGTCATTGAGAAGCTTTTGGCAGATAAGACCACGCTGGTGGCAGGCAGTGTAGTGATGGCCTTTGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-15a-5p(1), mmu-miR-34a-5p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-149-5p(1), mmu-miR-666-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TCCAACCGTGACGTTTGGACTCCGAT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCAP3B2_857_ORF_1
1.2856
0.541977978
0.993831632
798
ORF sequence:
ATGGCCTTTGAAGAGGTATGTCCAGAACGTATTGACCTGATTCACAAAAACTACCGGAAGCTCTGCAACCTGCTCATTGATGTGGAGGAGTGGGGCCAGGTGGTGATTATCAGCATGCTCACGCGTTATGCGCGAACGCAATTCCTGAGCCCTACGCAGAATGAGTCCTTGCTGGAGGAGAATCCCGAGAAGGCCTTCTATGGCTCCGAGGAGGACGAGGCCAAAGGCCCTGGATCAGAGGAGGCAGCCACTGCGGCGCTGCCCGCTCGGAAGCCCTATGTAATGGACCCAGATCACCGGCTGCTGCTGCGGAACACCAAGCCCCTGCTGCAGAGCCGCAGCGCCGCGGTGGTCATGGCGGTGGCGCAGCTTTACTTCCACCTAGCGCCTAAGGCAGAGGTGGGCGTCATCGCCAAGGCGCTGGTACGCCTGCTGCGCAGCCACAGTGAGGTGCAGTACGTAGTGCTCCAGAACGTGGCCACCATGTCCATCAAGCGCAGGGGTATGTTTGAACCCTACCTGAAGAGCTTCTACATTAGGTCCACGGATCCTACCCAGATCAAGATCCTGAAGCTGGAAGTGCTGACCAACCTGGCCAATGAGACTAACATCCCCACTGTTCTCCGGGAATTCCAGACCTACATTCGCAGCATGGACAAAGACTTTGTGGCAGCCACGATCCAGGCCATTGGACGATGTGCAACGAACATAGGCCGAGTCCGTGACACCTGTCTCAATGGCTTGGTGCAGCTTCTGTCCAACCGTGACGTTTGGACTCCGATCAGAAGGACCAGCTGA
Peptide sequence:
MAFEEVCPERIDLIHKNYRKLCNLLIDVEEWGQVVIISMLTRYARTQFLSPTQNESLLEENPEKAFYGSEEDEAKGPGSEEAATAALPARKPYVMDPDHRLLLRNTKPLLQSRSAAVVMAVAQLYFHLAPKAEVGVIAKALVRLLRSHSEVQYVVLQNVATMSIKRRGMFEPYLKSFYIRSTDPTQIKILKLEVLTNLANETNIPTVLREFQTYIRSMDKDFVAATIQAIGRCATNIGRVRDTCLNGLVQLLSNRDVWTPIRRTS
IRESfinder result
IRESfinder score
0.205842378
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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