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mmu_circAp1g1_276
Basic information of circular RNA
PanCircBase ID:
mmu_circAp1g1_276
mm39_Chr. Position ID:
chr8|110559348|110560198|+
Gene name:
Ap1g1
Transcript:
ENSMUST00000093157.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
8,9,10
Exon/intron offsets:
0,473,751
Genomic length:
850
Exon/intron sizes in nt:
96,81,99
Flanking exon/introns:
chr8:110557253-110559348|chr8:110560198-110564374
Splice length:
276
Other database IDs:
CIRCpedia: MMU_CIRCpedia_216654, circAtlas: mmu-Ap1g1_0024
Human Ortholog IDs:
Mature spliced Sequence:
CTTGTGCCCCAATTAGTTCGTATTCTAAAGAACCTCATCATGTCCGGATATTCCCCAGAACATGATGTCTCTGGTATCAGTGACCCCTTTTTGCAGGTACGAATTTTGCGGTTATTAAGAATTTTAGGACGGAATGACGATGATTCAAGTGAAGCTATGAATGATATATTAGCACAGGTTGCCACTAATACAGAGACTAGTAAAAATGTAGGAAATGCTATTCTGTATGAGACGGTTTTGACTATCATGGATATTAAATCAGAGAGTGGATTGCGA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGAGACGGTTTTGACTATCATGGA
59.78
ACCTGCAAAAAGGGGTCACT
59.74
147
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGAGACGGTTTTGACTATCATGG
58.5
ACCTGCAAAAAGGGGTCACT
59.74
147
PCR template sequence:
GGTTGCCACTAATACAGAGACTAGTAAAAATGTAGGAAATGCTATTCTGTATGAGACGGTTTTGACTATCATGGATATTAAATCAGAGAGTGGATTGCGACTTGTGCCCCAATTAGTTCGTATTCTAAAGAACCTCATCATGTCCGGATATTCCCCAGAACATGATGTCTCTGGTATCAGTGACCCCTTTTTGCAGGTAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-676-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GAGTGGATTGCGACTTGTGCCCCAAT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCAP1G1_276_ORF_1
0.9426
0.090553179
0.638552209
513
ORF sequence:
ATGTCCGGATATTCCCCAGAACATGATGTCTCTGGTATCAGTGACCCCTTTTTGCAGGTACGAATTTTGCGGTTATTAAGAATTTTAGGACGGAATGACGATGATTCAAGTGAAGCTATGAATGATATATTAGCACAGGTTGCCACTAATACAGAGACTAGTAAAAATGTAGGAAATGCTATTCTGTATGAGACGGTTTTGACTATCATGGATATTAAATCAGAGAGTGGATTGCGACTTGTGCCCCAATTAGTTCGTATTCTAAAGAACCTCATCATGTCCGGATATTCCCCAGAACATGATGTCTCTGGTATCAGTGACCCCTTTTTGCAGGTACGAATTTTGCGGTTATTAAGAATTTTAGGACGGAATGACGATGATTCAAGTGAAGCTATGAATGATATATTAGCACAGGTTGCCACTAATACAGAGACTAGTAAAAATGTAGGAAATGCTATTCTGTATGAGACGGTTTTGACTATCATGGATATTAAATCAGAGAGTGGATTGCGA
Peptide sequence:
MSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR
IRESfinder result
IRESfinder score
0.421024519
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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