top of page
mmu_circAnxa7_730
Basic information of circular RNA
PanCircBase ID:
mmu_circAnxa7_730
mm39_Chr. Position ID:
chr14|20510226|20515014|-
Gene name:
Anxa7
Transcript:
ENSMUST00000065504.17
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
11,10,9,8,7,6
Exon/intron offsets:
0,154,2396,2748,4450,4685
Genomic length:
4788
Exon/intron sizes in nt:
76,171,171,114,95,103
Flanking exon/introns:
chr14:20508750-20510226|chr14:20515014-20517938
Splice length:
730
Other database IDs:
CIRCpedia: MMU_CIRCpedia_12933, circAtlas: mmu-Anxa7_0002
Human Ortholog IDs:
Mature spliced Sequence:
CCCGCTTCGATGACTCAGGGCACCCAAGGAACAATCCTCCCAGCCTCCAACTTTGATGCTATGAGAGATGCAGAAATTCTCCGCAAAGCAATGAAAGGGTTTGGGACAGACGAGCAAGCAATTGTGGATGTTGTGTCTAACCGTTCCAATGACCAGAGGCAACAAATCAAAGCAGCTTTTAAGACCATGTATGGCAAGGATTTAATTAAAGATCTCAAGTCAGAATTGAGTGGGAATATGGAAGAATTAATCCTTGCGCTGTTCATGCCTTCTACATACTATGATGCCTGGAGCTTACGGAAGGCAATGCAGGGAGCAGGAACTCAAGAACGTGTATTGATAGAGATTTTGTGCACAAGAACAAATCAAGAAATTCGAGACATTGTTAGATGTTACCAATTAGAATTTGGACGAGACCTTGAGAAGGACATTAGGTCAGATACCTCGGGACATTTTGAACGTCTCCTCGTGTCCATGTGCCAGGGAAACCGTGACGAGAGGCAGAGCGTGAACCACCAGATGGCCCAGGAGGACGCTCAGCGTCTCTATCAGGCCGGGGAGGGGAGACTGGGAACGGATGAATCCTGTTTCAACATGATTCTCGCCACAAGGAGCTTCCCTCAGCTGAAGGCCACTATGGAGGCTTATTCCAGGATGGCTAATCGCGATTTGCTAAGCAGTGTAAGCCGAGAATTTTCGGGATACGTTGAAAGTGGTTTGAAGACCATCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGCGATTTGCTAAGCAGTGT
59.56
ACCCTTTCATTGCTTTGCGG
59.68
167
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCTAAGCAGTGTAAGCCGA
59.39
ACCCTTTCATTGCTTTGCGG
59.68
160
PCR template sequence:
GCCACTATGGAGGCTTATTCCAGGATGGCTAATCGCGATTTGCTAAGCAGTGTAAGCCGAGAATTTTCGGGATACGTTGAAAGTGGTTTGAAGACCATCTCCCGCTTCGATGACTCAGGGCACCCAAGGAACAATCCTCCCAGCCTCCAACTTTGATGCTATGAGAGATGCAGAAATTCTCCGCAAAGCAATGAAAGGGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-320-3p(1), mmu-miR-452-3p(1), mmu-miR-3105-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTGAAGACCATCTCCCGCTTCGATGA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANXA7_730_ORF_1
0.7448
0.202712569
0.927148559
777
ORF sequence:
ATGACTCAGGGCACCCAAGGAACAATCCTCCCAGCCTCCAACTTTGATGCTATGAGAGATGCAGAAATTCTCCGCAAAGCAATGAAAGGGTTTGGGACAGACGAGCAAGCAATTGTGGATGTTGTGTCTAACCGTTCCAATGACCAGAGGCAACAAATCAAAGCAGCTTTTAAGACCATGTATGGCAAGGATTTAATTAAAGATCTCAAGTCAGAATTGAGTGGGAATATGGAAGAATTAATCCTTGCGCTGTTCATGCCTTCTACATACTATGATGCCTGGAGCTTACGGAAGGCAATGCAGGGAGCAGGAACTCAAGAACGTGTATTGATAGAGATTTTGTGCACAAGAACAAATCAAGAAATTCGAGACATTGTTAGATGTTACCAATTAGAATTTGGACGAGACCTTGAGAAGGACATTAGGTCAGATACCTCGGGACATTTTGAACGTCTCCTCGTGTCCATGTGCCAGGGAAACCGTGACGAGAGGCAGAGCGTGAACCACCAGATGGCCCAGGAGGACGCTCAGCGTCTCTATCAGGCCGGGGAGGGGAGACTGGGAACGGATGAATCCTGTTTCAACATGATTCTCGCCACAAGGAGCTTCCCTCAGCTGAAGGCCACTATGGAGGCTTATTCCAGGATGGCTAATCGCGATTTGCTAAGCAGTGTAAGCCGAGAATTTTCGGGATACGTTGAAAGTGGTTTGAAGACCATCTCCCGCTTCGATGACTCAGGGCACCCAAGGAACAATCCTCCCAGCCTCCAACTTTGA
Peptide sequence:
MTQGTQGTILPASNFDAMRDAEILRKAMKGFGTDEQAIVDVVSNRSNDQRQQIKAAFKTMYGKDLIKDLKSELSGNMEELILALFMPSTYYDAWSLRKAMQGAGTQERVLIEILCTRTNQEIRDIVRCYQLEFGRDLEKDIRSDTSGHFERLLVSMCQGNRDERQSVNHQMAQEDAQRLYQAGEGRLGTDESCFNMILATRSFPQLKATMEAYSRMANRDLLSSVSREFSGYVESGLKTISRFDDSGHPRNNPPSLQL
IRESfinder result
IRESfinder score
0.3533255
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page