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mmu_circAnxa4_322

Basic information of circular RNA
PanCircBase ID:

mmu_circAnxa4_322

mm39_Chr. Position ID:

chr6|86725868|86730875|-

Gene name:

Anxa4

Transcript:

ENSMUST00000113675.8

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

4

Exon/intron indexes:

8,7,6,5

Exon/intron offsets:

0,2176,3266,4916

Genomic length:

5007

Exon/intron sizes in nt:

94,57,80,91

Flanking exon/introns:

chr6:86721702-86725868|chr6:86730875-86731834

Splice length:

322

Other database IDs:

circAtlas: mmu-Anxa4_0004

Human Ortholog IDs:
Mature spliced Sequence:

GGAGCTGGCACGGACGAGGGCTGTCTGATTGAGATCCTGGCCTCTCGTACCCCTGAGGAGATCCGTCGAATCAACCAGACATACCAGCAGCAATATGGAAGGAGCCTTGAAGAGGACATCTGCTCTGACACATCCTTCATGTTCCAGCGAGTACTGGTGTCCCTGTCGGCGGCTGGCAGGGATGAAGGAAATTACCTTGATGATGCTCTTATGAAGCAGGACGCCCAGGAACTGTATGAGGCTGGAGAGAAGAGATGGGGGACAGACGAGGTGAAATTCCTAAGCATTCTCTGTTCCCGGAACCGGAACCATCTGCTCCACG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

AAGAGATGGGGGACAGACGA

59.96

GACGGATCTCCTCAGGGGTA

59.81

140

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

GAAGAGATGGGGGACAGACG

59.54

ACGGATCTCCTCAGGGGTAC

60.11

140

PCR template sequence:

GCCCAGGAACTGTATGAGGCTGGAGAGAAGAGATGGGGGACAGACGAGGTGAAATTCCTAAGCATTCTCTGTTCCCGGAACCGGAACCATCTGCTCCACGGGAGCTGGCACGGACGAGGGCTGTCTGATTGAGATCCTGGCCTCTCGTACCCCTGAGGAGATCCGTCGAATCAACCAGACATACCAGCAGCAATATGGAA

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

1

Interacting miRNAs (#binding sites)

mmu-miR-205-5p(1)

siRNAs for circular RNA silencing
Junction sequence

CATCTGCTCCACGGGAGCTGGCACGG

siRNA sets

NA

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCANXA4_322_ORF_1

0.8684

0.279572606

0.280597772

216

ORF sequence:

ATGTTCCAGCGAGTACTGGTGTCCCTGTCGGCGGCTGGCAGGGATGAAGGAAATTACCTTGATGATGCTCTTATGAAGCAGGACGCCCAGGAACTGTATGAGGCTGGAGAGAAGAGATGGGGGACAGACGAGGTGAAATTCCTAAGCATTCTCTGTTCCCGGAACCGGAACCATCTGCTCCACGGGAGCTGGCACGGACGAGGGCTGTCTGATTGA

Peptide sequence:

MFQRVLVSLSAAGRDEGNYLDDALMKQDAQELYEAGEKRWGTDEVKFLSILCSRNRNHLLHGSWHGRGLSD

IRESfinder result

IRESfinder score

0.397114581

IRES/non IRES

non-IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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Institute of Life sciences, Bhubaneswar, India

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