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mmu_circAnxa4_322
Basic information of circular RNA
PanCircBase ID:
mmu_circAnxa4_322
mm39_Chr. Position ID:
chr6|86725868|86730875|-
Gene name:
Anxa4
Transcript:
ENSMUST00000113675.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
8,7,6,5
Exon/intron offsets:
0,2176,3266,4916
Genomic length:
5007
Exon/intron sizes in nt:
94,57,80,91
Flanking exon/introns:
chr6:86721702-86725868|chr6:86730875-86731834
Splice length:
322
Other database IDs:
circAtlas: mmu-Anxa4_0004
Human Ortholog IDs:
Mature spliced Sequence:
GGAGCTGGCACGGACGAGGGCTGTCTGATTGAGATCCTGGCCTCTCGTACCCCTGAGGAGATCCGTCGAATCAACCAGACATACCAGCAGCAATATGGAAGGAGCCTTGAAGAGGACATCTGCTCTGACACATCCTTCATGTTCCAGCGAGTACTGGTGTCCCTGTCGGCGGCTGGCAGGGATGAAGGAAATTACCTTGATGATGCTCTTATGAAGCAGGACGCCCAGGAACTGTATGAGGCTGGAGAGAAGAGATGGGGGACAGACGAGGTGAAATTCCTAAGCATTCTCTGTTCCCGGAACCGGAACCATCTGCTCCACG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAGAGATGGGGGACAGACGA
59.96
GACGGATCTCCTCAGGGGTA
59.81
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GAAGAGATGGGGGACAGACG
59.54
ACGGATCTCCTCAGGGGTAC
60.11
140
PCR template sequence:
GCCCAGGAACTGTATGAGGCTGGAGAGAAGAGATGGGGGACAGACGAGGTGAAATTCCTAAGCATTCTCTGTTCCCGGAACCGGAACCATCTGCTCCACGGGAGCTGGCACGGACGAGGGCTGTCTGATTGAGATCCTGGCCTCTCGTACCCCTGAGGAGATCCGTCGAATCAACCAGACATACCAGCAGCAATATGGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-205-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CATCTGCTCCACGGGAGCTGGCACGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANXA4_322_ORF_1
0.8684
0.279572606
0.280597772
216
ORF sequence:
ATGTTCCAGCGAGTACTGGTGTCCCTGTCGGCGGCTGGCAGGGATGAAGGAAATTACCTTGATGATGCTCTTATGAAGCAGGACGCCCAGGAACTGTATGAGGCTGGAGAGAAGAGATGGGGGACAGACGAGGTGAAATTCCTAAGCATTCTCTGTTCCCGGAACCGGAACCATCTGCTCCACGGGAGCTGGCACGGACGAGGGCTGTCTGATTGA
Peptide sequence:
MFQRVLVSLSAAGRDEGNYLDDALMKQDAQELYEAGEKRWGTDEVKFLSILCSRNRNHLLHGSWHGRGLSD
IRESfinder result
IRESfinder score
0.397114581
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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