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mmu_circAnxa3_380
Basic information of circular RNA
PanCircBase ID:
mmu_circAnxa3_380
mm39_Chr. Position ID:
chr5|96960700|96972825|+
Gene name:
Anxa3
Transcript:
ENSMUST00000031447.12
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
4,5,6,7
Exon/intron offsets:
0,3499,7560,12045
Genomic length:
12125
Exon/intron sizes in nt:
95,114,91,80
Flanking exon/introns:
chr5:96958996-96960700|chr5:96972825-96976206
Splice length:
380
Other database IDs:
circAtlas: hsa-ANXA3_0019, CIRCpedia: HSA_CIRCpedia_49236
Human Ortholog IDs:
Mature spliced Sequence:
GGACTGACGAGAAAACCCTCATCAACATTCTGACGGAGCGGTCGAACGCGCAGCGACAGCTGATTGTCAAGCAGTACCAAGCAGCGTATGAACAGGAGCTGAAAGATGACTTGAAGGGTGATCTCTCTGGCCACTTCGAGCACGTCATGGTGGCTCTTGTTACTGCACCAGCCCTGTTTGATGCGAAGCAACTGAAGAAATCCATGAAGGGAACTGGCACAGATGAAGATGCCCTGATTGAAATCCTAACAACCAGGTCAAGCAGGCAGATGAAGGAAATCTCGCAGGCCTATTATACAGTGTATAAGAAGAGCCTCGGGGATGACATTAGCTCTGAGACGTCTGGAGACTTCCGGAAAGCTCTGCTGACTCTGGCAGAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAGAAGAGCCTCGGGGATGA
60.33
TACGCTGCTTGGTACTGCTT
59.68
163
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGAAGAGCCTCGGGGATGA
60.33
GCTCCTGTTCATACGCTGCT
60.46
174
PCR template sequence:
CTCGCAGGCCTATTATACAGTGTATAAGAAGAGCCTCGGGGATGACATTAGCTCTGAGACGTCTGGAGACTTCCGGAAAGCTCTGCTGACTCTGGCAGATGGACTGACGAGAAAACCCTCATCAACATTCTGACGGAGCGGTCGAACGCGCAGCGACAGCTGATTGTCAAGCAGTACCAAGCAGCGTATGAACAGGAGCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-335-5p(1), mmu-miR-138-5p(1), mmu-miR-802-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GACTCTGGCAGATGGACTGACGAGAA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANXA3_380_ORF_1
1.0169
0.286623341
0.432617813
267
ORF sequence:
ATGGTGGCTCTTGTTACTGCACCAGCCCTGTTTGATGCGAAGCAACTGAAGAAATCCATGAAGGGAACTGGCACAGATGAAGATGCCCTGATTGAAATCCTAACAACCAGGTCAAGCAGGCAGATGAAGGAAATCTCGCAGGCCTATTATACAGTGTATAAGAAGAGCCTCGGGGATGACATTAGCTCTGAGACGTCTGGAGACTTCCGGAAAGCTCTGCTGACTCTGGCAGATGGACTGACGAGAAAACCCTCATCAACATTCTGA
Peptide sequence:
MVALVTAPALFDAKQLKKSMKGTGTDEDALIEILTTRSSRQMKEISQAYYTVYKKSLGDDISSETSGDFRKALLTLADGLTRKPSSTF
IRESfinder result
IRESfinder score
0.259696303
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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