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mmu_circAnp32e_445
Basic information of circular RNA
PanCircBase ID:
mmu_circAnp32e_445
mm39_Chr. Position ID:
chr3|95841220|95844507|+
Gene name:
Anp32e
Transcript:
ENSMUST00000165307.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
2,3,4
Exon/intron offsets:
0,867,3115
Genomic length:
3287
Exon/intron sizes in nt:
150,123,172
Flanking exon/introns:
chr3:95836962-95841220|chr3:95844507-95845193
Splice length:
445
Other database IDs:
circAtlas: mmu-Anp32e_0005
Human Ortholog IDs:
Mature spliced Sequence:
GTGACAGAGTTAGTCCTCGATAATTGCTTGTGTGTCAATGGGGAAATCGAAGGCCTGAATGACACCTTTAAGGAACTGGAGTTTCTTAGCATGGCCAACGTGGAGTTGAGTTCCTTGGCCCGGCTTCCCAGCTTGAATAAACTCCGGAAGTTGGAACTTAGTGACAATATAATTTCTGGAGGCTTGGAAGTCCTGGCAGAGAAATGTCCAAATCTTACCTACCTCAATCTGAGTGGAAACAAAATAAAAGATCTCAGTACAGTAGAAGCGCTGCAAAATCTTAAAAATTTGAAAAGTCTCGACTTGTTTAACTGTGAGATCACAAACCTGGAAGATTATAGAGAAAGTATTTTTGAACTGCTGCAGCAGATCACCTACCTGGACGGATTCGACCAGGAGGACAACGAAGCTCCCGACTCGGAGGAGGAGGATGACGACGACGAGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACCTACCTGGACGGATTCGA
60.03
AGGTGTCATTCAGGCCTTCG
60.04
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CACCTACCTGGACGGATTCG
59.9
AGGTGTCATTCAGGCCTTCG
60.04
141
PCR template sequence:
AGTATTTTTGAACTGCTGCAGCAGATCACCTACCTGGACGGATTCGACCAGGAGGACAACGAAGCTCCCGACTCGGAGGAGGAGGATGACGACGACGAGGGTGACAGAGTTAGTCCTCGATAATTGCTTGTGTGTCAATGGGGAAATCGAAGGCCTGAATGACACCTTTAAGGAACTGGAGTTTCTTAGCATGGCCAACG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-let-7a-5p(1), mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-let-7c-5p(1), mmu-let-7d-5p(1), mmu-miR-127-3p(1), mmu-miR-98-5p(1), mmu-miR-7a-2-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GACGACGACGAGGGTGACAGAGTTAG
siRNA sets
TAACTCTGTCACCCTCGTC, TCTGTCACCCTCGTCGTCG, TGTCACCCTCGTCGTCGTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANP32E_445_ORF_1
1.2952
0.322893439
0.855347572
459
ORF sequence:
ATGACGACGACGAGGGTGACAGAGTTAGTCCTCGATAATTGCTTGTGTGTCAATGGGGAAATCGAAGGCCTGAATGACACCTTTAAGGAACTGGAGTTTCTTAGCATGGCCAACGTGGAGTTGAGTTCCTTGGCCCGGCTTCCCAGCTTGAATAAACTCCGGAAGTTGGAACTTAGTGACAATATAATTTCTGGAGGCTTGGAAGTCCTGGCAGAGAAATGTCCAAATCTTACCTACCTCAATCTGAGTGGAAACAAAATAAAAGATCTCAGTACAGTAGAAGCGCTGCAAAATCTTAAAAATTTGAAAAGTCTCGACTTGTTTAACTGTGAGATCACAAACCTGGAAGATTATAGAGAAAGTATTTTTGAACTGCTGCAGCAGATCACCTACCTGGACGGATTCGACCAGGAGGACAACGAAGCTCCCGACTCGGAGGAGGAGGATGACGACGACGAG
Peptide sequence:
MTTTRVTELVLDNCLCVNGEIEGLNDTFKELEFLSMANVELSSLARLPSLNKLRKLELSDNIISGGLEVLAEKCPNLTYLNLSGNKIKDLSTVEALQNLKNLKSLDLFNCEITNLEDYRESIFELLQQITYLDGFDQEDNEAPDSEEEDDDDE
IRESfinder result
IRESfinder score
0.492102829
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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