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mmu_circAnkrd52_312
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkrd52_312
mm39_Chr. Position ID:
chr10|128225116|128225721|+
Gene name:
Ankrd52
Transcript:
ENSMUST00000014642.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
24,25,26
Exon/intron offsets:
0,233,522
Genomic length:
605
Exon/intron sizes in nt:
146,83,83
Flanking exon/introns:
chr10:128225039-128225116|chr10:128225721-128225901
Splice length:
312
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GACTCCCCTTCACGCCGCTGCCTTCGCGGACAACGTCTCTGGGCTCCGGATGCTGTTGCAGCACCAAGCCGAAGTGAATGCCACCGACCACACTGGCCGCACTGCGCTCATGACGGCCGCTGAGAGTGGACAGACTGCTGCTGTGGAATTTCTGCTGTACCGAGGGAAGGCAGACCTGACTGTGCTGGATGAGAACAAGAACACTGCCCTTCACTTGGCTTGTAGCAAGGGCCATGAGAAATGTGCCCTCATGATCCTGGCAGAAACCCAAGACCTTGGCCTTATCAATGCTACCAACAGTGCACTGCAGAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCCTGGCAGAAACCCAAGAC
59.89
GTGGCATTCACTTCGGCTTG
60.11
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTGGCAGAAACCCAAGACCT
59.89
GTGGCATTCACTTCGGCTTG
60.11
140
PCR template sequence:
ACTTGGCTTGTAGCAAGGGCCATGAGAAATGTGCCCTCATGATCCTGGCAGAAACCCAAGACCTTGGCCTTATCAATGCTACCAACAGTGCACTGCAGATGACTCCCCTTCACGCCGCTGCCTTCGCGGACAACGTCTCTGGGCTCCGGATGCTGTTGCAGCACCAAGCCGAAGTGAATGCCACCGACCACACTGGCCGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-33-5p(1), mmu-miR-148a-3p(1), mmu-miR-328-3p(1), mmu-miR-34b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GTGCACTGCAGATGACTCCCCTTCAC
siRNA sets
GTGAAGGGGAGTCATCTGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKRD52_312_ORF_1
1.2106
0.452420999
0.951583743
573
ORF sequence:
ATGCTGTTGCAGCACCAAGCCGAAGTGAATGCCACCGACCACACTGGCCGCACTGCGCTCATGACGGCCGCTGAGAGTGGACAGACTGCTGCTGTGGAATTTCTGCTGTACCGAGGGAAGGCAGACCTGACTGTGCTGGATGAGAACAAGAACACTGCCCTTCACTTGGCTTGTAGCAAGGGCCATGAGAAATGTGCCCTCATGATCCTGGCAGAAACCCAAGACCTTGGCCTTATCAATGCTACCAACAGTGCACTGCAGATGACTCCCCTTCACGCCGCTGCCTTCGCGGACAACGTCTCTGGGCTCCGGATGCTGTTGCAGCACCAAGCCGAAGTGAATGCCACCGACCACACTGGCCGCACTGCGCTCATGACGGCCGCTGAGAGTGGACAGACTGCTGCTGTGGAATTTCTGCTGTACCGAGGGAAGGCAGACCTGACTGTGCTGGATGAGAACAAGAACACTGCCCTTCACTTGGCTTGTAGCAAGGGCCATGAGAAATGTGCCCTCATGATCCTGGCAGAAACCCAAGACCTTGGCCTTATCAATGCTACCAACAGTGCACTGCAG
Peptide sequence:
MLLQHQAEVNATDHTGRTALMTAAESGQTAAVEFLLYRGKADLTVLDENKNTALHLACSKGHEKCALMILAETQDLGLINATNSALQMTPLHAAAFADNVSGLRMLLQHQAEVNATDHTGRTALMTAAESGQTAAVEFLLYRGKADLTVLDENKNTALHLACSKGHEKCALMILAETQDLGLINATNSALQ
IRESfinder result
IRESfinder score
0.30735987
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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