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mmu_circAnkrd44_331
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkrd44_331
mm39_Chr. Position ID:
chr1|54772086|54782587|-
Gene name:
Ankrd44
Transcript:
ENSMUST00000179030.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
13,12,11,10
Exon/intron offsets:
0,2068,3302,10386
Genomic length:
10501
Exon/intron sizes in nt:
69,64,83,115
Flanking exon/introns:
chr1:54769033-54772086|chr1:54782587-54792048
Splice length:
331
Other database IDs:
circAtlas: mmu-Ankrd44_0016
Human Ortholog IDs:
Mature spliced Sequence:
GAGGTGAGATCGACTGTGTGGATAAGGATGGCAACACACCTCTCCATGTGGCTGCGAGACATGGTCACGAGCTCCTGATTAACACCCTAATCACTAGCGGAGCCGACACAGCCAAGTGTGGAATCCATAGCATGTTCCCCCTACATTTAGCCGCCCTAAATGCTCACTCTGACTGCTGCAGGAAGTTGTTATCATCTGGCTTTGAAATAGACACCCCAGATACGTTTGGAAGAACGTGCCTCCACGCCGCTGCTGCAGGAGGCAATGTAGAATGCATAAAGCTCTTGCAGAGCAGCGGAGCAGATTTTCACAAAAAGGACAAATGTGGGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCAGGAGGCAATGTAGAATGC
59.66
GGAGCTCGTGACCATGTCTC
60.18
152
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCAGGAGGCAATGTAGAATGC
59.66
CAGGAGCTCGTGACCATGTC
60.46
154
PCR template sequence:
GAACGTGCCTCCACGCCGCTGCTGCAGGAGGCAATGTAGAATGCATAAAGCTCTTGCAGAGCAGCGGAGCAGATTTTCACAAAAAGGACAAATGTGGGAGGAGGTGAGATCGACTGTGTGGATAAGGATGGCAACACACCTCTCCATGTGGCTGCGAGACATGGTCACGAGCTCCTGATTAACACCCTAATCACTAGCGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-221-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ACAAATGTGGGAGGAGGTGAGATCGA
siRNA sets
TCGATCTCACCTCCTCCCA,GATCTCACCTCCTCCCACA,ATCTCACCTCCTCCCACAT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKRD44_331_ORF_1
0.6829
-0.045215525
0.064179136
207
ORF sequence:
ATGTTCCCCCTACATTTAGCCGCCCTAAATGCTCACTCTGACTGCTGCAGGAAGTTGTTATCATCTGGCTTTGAAATAGACACCCCAGATACGTTTGGAAGAACGTGCCTCCACGCCGCTGCTGCAGGAGGCAATGTAGAATGCATAAAGCTCTTGCAGAGCAGCGGAGCAGATTTTCACAAAAAGGACAAATGTGGGAGGAGGTGA
Peptide sequence:
MFPLHLAALNAHSDCCRKLLSSGFEIDTPDTFGRTCLHAAAAGGNVECIKLLQSSGADFHKKDKCGRR
IRESfinder result
IRESfinder score
0.469949638
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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