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mmu_circAnkrd44_1695
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkrd44_1695
mm39_Chr. Position ID:
chr1|54720278|54867854|-
Gene name:
Ankrd44
Transcript:
ENSMUST00000179030.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
16
Exon/intron indexes:
17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2
Exon/intron offsets:
0,41894,46370,48614,51808,53876,55110,62194,71770,81141,82525,85230,85664,97167,111333,147492
Genomic length:
147576
Exon/intron sizes in nt:
72,112,81,141,69,64,83,115,79,213,143,88,201,71,79,84
Flanking exon/introns:
chr1:54706732-54720278|chr1:54867854-54965298
Splice length:
1695
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
CCACCACTGGTCCAGGCAATCTTCAGTGGCGACCCAGAGGAGATTCGCATGCTCATCCATAAGACTGAAGACGTAAACGCACTGGATTCTGAGAAACGAACCCCGCTTCATGTGGCTGCATTCCTGGGAGATGCAGAGATCATTGAACTCCTGATTTTGTCAGGAGCTCGTGTAAATGCCAAGGACAACATGTGGCTGACCCCACTGCACCGGGCTGTTGCTTCCAGAAGTGAAGAGGCAGTGCAAGTATTGATTAAACACTCGGCTGATGTCAATGCAAGGGACAAGAATTGGCAGACCCCCCTCCATGTGGCAGCAGCCAATAAGGCCGTCAAGTGTGCAGAAGTGATCATTCCACTACTGAGCAGTGTCAATGTCTCCGACAGAGGCGGGCGCACAGCCTTGCACCACGCCGCTCTGAATGGACACATGGAGATGGTCAATTTACTCTTGGCCAAAGGGGCAAACATCAATGCATTTGACAAGAAGGACCGACGAGCTCTCCACTGGGCAGCATACATGGGTCACCTGGACGTTGTGGCGCTGCTCATTAACCATGGTGCAGAAGTTACCTGCAAGGATAAGAAGGGCTACACCCCGCTGCACGCTGCAGCCTCCAATGGGCAGATCAGTGTTGTCAAACATCTCCTGAACCTGGGGGTGGAGATTGATGAAATCAATGTCTATGGAAACACAGCACTTCACATTGCCTGCTACAATGGCCAGGATGCTGTCGTTAATGAGCTGATCGACTATGGTGCTAACGTGAATCAGCCCAACAACAGTGGCTTTACCCCTCTGCACTTTGCAGCGGCGTCTACTCACGGTGCTCTGTGTCTGGAGTTGTTAGTGAACAATGGGGCCGATGTGAACATTCAGAGTAAGGATGGCAAAAGTCCTCTGCACATGACAGCTGTCCATGGACGGTTCACGCGGTCACAAACCCTCATCCAGAATGGAGGTGAGATCGACTGTGTGGATAAGGATGGCAACACACCTCTCCATGTGGCTGCGAGACATGGTCACGAGCTCCTGATTAACACCCTAATCACTAGCGGAGCCGACACAGCCAAGTGTGGAATCCATAGCATGTTCCCCCTACATTTAGCCGCCCTAAATGCTCACTCTGACTGCTGCAGGAAGTTGTTATCATCTGGCTTTGAAATAGACACCCCAGATACGTTTGGAAGAACGTGCCTCCACGCCGCTGCTGCAGGAGGCAATGTAGAATGCATAAAGCTCTTGCAGAGCAGCGGAGCAGATTTTCACAAAAAGGACAAATGTGGGAGAACCCCATTGCACTATGCAGCTGCAAATTGCCATTTCCACTGTATTAAAGCATTAGTGACCACCGGAGCCAACGTTAATGAAACAGACGACTGGGGACGGACAGCTCTGCACTACGCTGCTGCATCAGACATGGATAGAAATAAGATGATCTTAGGAAATGCCCATGACAATTCTGAAGAACTTGAAAGAGCCAGAGAAGTGAAGGAAAAAGATGCTGCACTATGTCTAGAATTTCTGCTTCAAAATGATGCAAACCCATCCATCCGGGACAAGGAAGGCTACAATAGCATCCACTATGCTGCTGCCTATGGCCACAGACAGTGTCTAGAACTGCTTTTGGAAAGAACCAACACTGGCTTTGAAGAATCAGATGGCGGTGCTCTCAAGAGTCCACTCCACTTAGCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GAATCAGATGGCGGTGCTCT
60.18
CGTTTCTCAGAATCCAGTGCG
59.61
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGAATCAGATGGCGGTGCTC
60.18
CGTTTCTCAGAATCCAGTGCG
59.61
141
PCR template sequence:
CTATGGCCACAGACAGTGTCTAGAACTGCTTTTGGAAAGAACCAACACTGGCTTTGAAGAATCAGATGGCGGTGCTCTCAAGAGTCCACTCCACTTAGCACCACCACTGGTCCAGGCAATCTTCAGTGGCGACCCAGAGGAGATTCGCATGCTCATCCATAAGACTGAAGACGTAAACGCACTGGATTCTGAGAAACGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
22
Interacting miRNAs (#binding sites)
mmu-miR-298-5p(2), mmu-miR-149-5p(2), mmu-miR-155-5p(1), mmu-miR-15a-5p(1), mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-103-3p(1), mmu-miR-221-3p(1), mmu-miR-322-5p(1), mmu-miR-106b-5p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-33-5p(1), mmu-miR-130a-3p(1), mmu-miR-503-5p(1), mmu-miR-136-5p(1), mmu-miR-130b-3p(1), mmu-miR-301b-3p(1), mmu-miR-758-3p(1), mmu-miR-107-3p(1), mmu-miR-301a-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ACTCCACTTAGCACCACCACTGGTCC
siRNA sets
AGTGGTGGTGCTAAGTGGA, GTGGTGGTGCTAAGTGGAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKRD44_1695_ORF_1
1.142
0.272789318
1
3342
ORF sequence:
ATGCTCATCCATAAGACTGAAGACGTAAACGCACTGGATTCTGAGAAACGAACCCCGCTTCATGTGGCTGCATTCCTGGGAGATGCAGAGATCATTGAACTCCTGATTTTGTCAGGAGCTCGTGTAAATGCCAAGGACAACATGTGGCTGACCCCACTGCACCGGGCTGTTGCTTCCAGAAGTGAAGAGGCAGTGCAAGTATTGATTAAACACTCGGCTGATGTCAATGCAAGGGACAAGAATTGGCAGACCCCCCTCCATGTGGCAGCAGCCAATAAGGCCGTCAAGTGTGCAGAAGTGATCATTCCACTACTGAGCAGTGTCAATGTCTCCGACAGAGGCGGGCGCACAGCCTTGCACCACGCCGCTCTGAATGGACACATGGAGATGGTCAATTTACTCTTGGCCAAAGGGGCAAACATCAATGCATTTGACAAGAAGGACCGACGAGCTCTCCACTGGGCAGCATACATGGGTCACCTGGACGTTGTGGCGCTGCTCATTAACCATGGTGCAGAAGTTACCTGCAAGGATAAGAAGGGCTACACCCCGCTGCACGCTGCAGCCTCCAATGGGCAGATCAGTGTTGTCAAACATCTCCTGAACCTGGGGGTGGAGATTGATGAAATCAATGTCTATGGAAACACAGCACTTCACATTGCCTGCTACAATGGCCAGGATGCTGTCGTTAATGAGCTGATCGACTATGGTGCTAACGTGAATCAGCCCAACAACAGTGGCTTTACCCCTCTGCACTTTGCAGCGGCGTCTACTCACGGTGCTCTGTGTCTGGAGTTGTTAGTGAACAATGGGGCCGATGTGAACATTCAGAGTAAGGATGGCAAAAGTCCTCTGCACATGACAGCTGTCCATGGACGGTTCACGCGGTCACAAACCCTCATCCAGAATGGAGGTGAGATCGACTGTGTGGATAAGGATGGCAACACACCTCTCCATGTGGCTGCGAGACATGGTCACGAGCTCCTGATTAACACCCTAATCACTAGCGGAGCCGACACAGCCAAGTGTGGAATCCATAGCATGTTCCCCCTACATTTAGCCGCCCTAAATGCTCACTCTGACTGCTGCAGGAAGTTGTTATCATCTGGCTTTGAAATAGACACCCCAGATACGTTTGGAAGAACGTGCCTCCACGCCGCTGCTGCAGGAGGCAATGTAGAATGCATAAAGCTCTTGCAGAGCAGCGGAGCAGATTTTCACAAAAAGGACAAATGTGGGAGAACCCCATTGCACTATGCAGCTGCAAATTGCCATTTCCACTGTATTAAAGCATTAGTGACCACCGGAGCCAACGTTAATGAAACAGACGACTGGGGACGGACAGCTCTGCACTACGCTGCTGCATCAGACATGGATAGAAATAAGATGATCTTAGGAAATGCCCATGACAATTCTGAAGAACTTGAAAGAGCCAGAGAAGTGAAGGAAAAAGATGCTGCACTATGTCTAGAATTTCTGCTTCAAAATGATGCAAACCCATCCATCCGGGACAAGGAAGGCTACAATAGCATCCACTATGCTGCTGCCTATGGCCACAGACAGTGTCTAGAACTGCTTTTGGAAAGAACCAACACTGGCTTTGAAGAATCAGATGGCGGTGCTCTCAAGAGTCCACTCCACTTAGCACCACCACTGGTCCAGGCAATCTTCAGTGGCGACCCAGAGGAGATTCGCATGCTCATCCATAAGACTGAAGACGTAAACGCACTGGATTCTGAGAAACGAACCCCGCTTCATGTGGCTGCATTCCTGGGAGATGCAGAGATCATTGAACTCCTGATTTTGTCAGGAGCTCGTGTAAATGCCAAGGACAACATGTGGCTGACCCCACTGCACCGGGCTGTTGCTTCCAGAAGTGAAGAGGCAGTGCAAGTATTGATTAAACACTCGGCTGATGTCAATGCAAGGGACAAGAATTGGCAGACCCCCCTCCATGTGGCAGCAGCCAATAAGGCCGTCAAGTGTGCAGAAGTGATCATTCCACTACTGAGCAGTGTCAATGTCTCCGACAGAGGCGGGCGCACAGCCTTGCACCACGCCGCTCTGAATGGACACATGGAGATGGTCAATTTACTCTTGGCCAAAGGGGCAAACATCAATGCATTTGACAAGAAGGACCGACGAGCTCTCCACTGGGCAGCATACATGGGTCACCTGGACGTTGTGGCGCTGCTCATTAACCATGGTGCAGAAGTTACCTGCAAGGATAAGAAGGGCTACACCCCGCTGCACGCTGCAGCCTCCAATGGGCAGATCAGTGTTGTCAAACATCTCCTGAACCTGGGGGTGGAGATTGATGAAATCAATGTCTATGGAAACACAGCACTTCACATTGCCTGCTACAATGGCCAGGATGCTGTCGTTAATGAGCTGATCGACTATGGTGCTAACGTGAATCAGCCCAACAACAGTGGCTTTACCCCTCTGCACTTTGCAGCGGCGTCTACTCACGGTGCTCTGTGTCTGGAGTTGTTAGTGAACAATGGGGCCGATGTGAACATTCAGAGTAAGGATGGCAAAAGTCCTCTGCACATGACAGCTGTCCATGGACGGTTCACGCGGTCACAAACCCTCATCCAGAATGGAGGTGAGATCGACTGTGTGGATAAGGATGGCAACACACCTCTCCATGTGGCTGCGAGACATGGTCACGAGCTCCTGATTAACACCCTAATCACTAGCGGAGCCGACACAGCCAAGTGTGGAATCCATAGCATGTTCCCCCTACATTTAGCCGCCCTAAATGCTCACTCTGACTGCTGCAGGAAGTTGTTATCATCTGGCTTTGAAATAGACACCCCAGATACGTTTGGAAGAACGTGCCTCCACGCCGCTGCTGCAGGAGGCAATGTAGAATGCATAAAGCTCTTGCAGAGCAGCGGAGCAGATTTTCACAAAAAGGACAAATGTGGGAGAACCCCATTGCACTATGCAGCTGCAAATTGCCATTTCCACTGTATTAAAGCATTAGTGACCACCGGAGCCAACGTTAATGAAACAGACGACTGGGGACGGACAGCTCTGCACTACGCTGCTGCATCAGACATGGATAGAAATAAGATGATCTTAGGAAATGCCCATGACAATTCTGAAGAACTTGAAAGAGCCAGAGAAGTGAAGGAAAAAGATGCTGCACTATGTCTAGAATTTCTGCTTCAAAATGATGCAAACCCATCCATCCGGGACAAGGAAGGCTACAATAGCATCCACTATGCTGCTGCCTATGGCCACAGACAGTGTCTAGAACTGCTTTTGGAAAGAACCAACACTGGCTTTGAAGAATCAGATGGCGGTGCTCTCAAGAGTCCACTCCACTTAGCA
Peptide sequence:
MLIHKTEDVNALDSEKRTPLHVAAFLGDAEIIELLILSGARVNAKDNMWLTPLHRAVASRSEEAVQVLIKHSADVNARDKNWQTPLHVAAANKAVKCAEVIIPLLSSVNVSDRGGRTALHHAALNGHMEMVNLLLAKGANINAFDKKDRRALHWAAYMGHLDVVALLINHGAEVTCKDKKGYTPLHAAASNGQISVVKHLLNLGVEIDEINVYGNTALHIACYNGQDAVVNELIDYGANVNQPNNSGFTPLHFAAASTHGALCLELLVNNGADVNIQSKDGKSPLHMTAVHGRFTRSQTLIQNGGEIDCVDKDGNTPLHVAARHGHELLINTLITSGADTAKCGIHSMFPLHLAALNAHSDCCRKLLSSGFEIDTPDTFGRTCLHAAAAGGNVECIKLLQSSGADFHKKDKCGRTPLHYAAANCHFHCIKALVTTGANVNETDDWGRTALHYAAASDMDRNKMILGNAHDNSEELERAREVKEKDAALCLEFLLQNDANPSIRDKEGYNSIHYAAAYGHRQCLELLLERTNTGFEESDGGALKSPLHLAPPLVQAIFSGDPEEIRMLIHKTEDVNALDSEKRTPLHVAAFLGDAEIIELLILSGARVNAKDNMWLTPLHRAVASRSEEAVQVLIKHSADVNARDKNWQTPLHVAAANKAVKCAEVIIPLLSSVNVSDRGGRTALHHAALNGHMEMVNLLLAKGANINAFDKKDRRALHWAAYMGHLDVVALLINHGAEVTCKDKKGYTPLHAAASNGQISVVKHLLNLGVEIDEINVYGNTALHIACYNGQDAVVNELIDYGANVNQPNNSGFTPLHFAAASTHGALCLELLVNNGADVNIQSKDGKSPLHMTAVHGRFTRSQTLIQNGGEIDCVDKDGNTPLHVAARHGHELLINTLITSGADTAKCGIHSMFPLHLAALNAHSDCCRKLLSSGFEIDTPDTFGRTCLHAAAAGGNVECIKLLQSSGADFHKKDKCGRTPLHYAAANCHFHCIKALVTTGANVNETDDWGRTALHYAAASDMDRNKMILGNAHDNSEELERAREVKEKDAALCLEFLLQNDANPSIRDKEGYNSIHYAAAYGHRQCLELLLERTNTGFEESDGGALKSPLHLA
IRESfinder result
IRESfinder score
0.364508832
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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