top of page
mmu_circAnkrd44_1336
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkrd44_1336
mm39_Chr. Position ID:
chr1|54696774|54774218|-
Gene name:
Ankrd44
Transcript:
ENSMUST00000179030.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
12
Exon/intron indexes:
23,22,21,20,19,18,17,16,15,14,13,12
Exon/intron offsets:
0,1303,3385,5038,6283,9756,23504,65398,69874,72118,75312,77380
Genomic length:
77444
Exon/intron sizes in nt:
84,88,217,118,88,202,72,112,81,141,69,64
Flanking exon/introns:
chr1:54694965-54696774|chr1:54774218-54775388
Splice length:
1336
Other database IDs:
CIRCpedia: MMU_CIRCpedia_226696
Human Ortholog IDs:
Mature spliced Sequence:
GCTTTGAAATAGACACCCCAGATACGTTTGGAAGAACGTGCCTCCACGCCGCTGCTGCAGGAGGCAATGTAGAATGCATAAAGCTCTTGCAGAGCAGCGGAGCAGATTTTCACAAAAAGGACAAATGTGGGAGAACCCCATTGCACTATGCAGCTGCAAATTGCCATTTCCACTGTATTAAAGCATTAGTGACCACCGGAGCCAACGTTAATGAAACAGACGACTGGGGACGGACAGCTCTGCACTACGCTGCTGCATCAGACATGGATAGAAATAAGATGATCTTAGGAAATGCCCATGACAATTCTGAAGAACTTGAAAGAGCCAGAGAAGTGAAGGAAAAAGATGCTGCACTATGTCTAGAATTTCTGCTTCAAAATGATGCAAACCCATCCATCCGGGACAAGGAAGGCTACAATAGCATCCACTATGCTGCTGCCTATGGCCACAGACAGTGTCTAGAACTGCTTTTGGAAAGAACCAACACTGGCTTTGAAGAATCAGATGGCGGTGCTCTCAAGAGTCCACTCCACTTAGCAGCATACAATGGGCATCACCAAGCCTTGGAGGTCCTTCTCCAGTCCCTAGTGGACCTGGACATCAGGGATGAGAAAGGCCGGACAGCTCTGTACCTAGCTGCTTTCAAGGGACACACAGAATGTGTGGAGGCACTTGTTAACCAGGGCGCATCCATCTTTGTAAAGGACAATGTCACCAAAAGAACTCCACTTCATGCTTCAGTTATTAATGGTCACACACTGTGTTTGAGGCTACTACTTGAAACAGCAGACAATCCGGAAGTGGTTGATGTGAAAGATGCCAAGGGACAAACCCCGCTGATGCTTGCAGTAGCATATGGACACATTGATGCTGTTTCATTGTTACTTGAAAAGGAAGCAAACGTAGATGCGGTCGACATAGTGGGATGCACGGCTTTACATAGAGGGATTATGACAGGACATGAGGAATGTGTGCAAATGCTGCTGGAACAAGAAGCATCAATCCTCTGTAAAGATTCCAGAGGGAGGACACCCTTGCACTATGCGGCTGCTCGGGGCCACGCCACATGGCTGAATGAATTGCTCCAGATTGCCCTTTCTGAAGAAGACTGCTGTCTCAAAGACAACCAGGGATACACGCCACTGCACTGGGCGTGTTACAATGGTAATGAAAACTGCATAGAGGTACTTTTGGAGCAAAAATGTTTTCGAAAATTTATTGGTAATCCCTTCACTCCACTGCACTGTGCAATAATAAATGGTCACGAGAGCTGTGCATCATTGCTCCTGGGGGCCATAGATCCCAGCATTGTCAGCTGCAGGGATGACAAAGGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTCACGAGAGCTGTGCATCA
60.39
GCATTCTACATTGCCTCCTGC
59.66
153
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCACGAGAGCTGTGCATCAT
59.47
GCATTCTACATTGCCTCCTGC
59.66
152
PCR template sequence:
CACTGCACTGTGCAATAATAAATGGTCACGAGAGCTGTGCATCATTGCTCCTGGGGGCCATAGATCCCAGCATTGTCAGCTGCAGGGATGACAAAGGCAGGCTTTGAAATAGACACCCCAGATACGTTTGGAAGAACGTGCCTCCACGCCGCTGCTGCAGGAGGCAATGTAGAATGCATAAAGCTCTTGCAGAGCAGCGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
28
Interacting miRNAs (#binding sites)
mmu-miR-103-3p(2), mmu-miR-211-5p(2), mmu-miR-322-5p(2), mmu-miR-149-5p(2), mmu-miR-301b-3p(2), mmu-miR-107-3p(2), mmu-miR-301a-3p(2), mmu-miR-155-5p(1), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-32-5p(1), mmu-miR-221-3p(1), mmu-miR-26a-5p(1), mmu-miR-204-5p(1), mmu-miR-130a-3p(1), mmu-miR-298-5p(1), mmu-miR-324-5p(1), mmu-miR-503-5p(1), mmu-miR-363-3p(1), mmu-miR-26b-5p(1), mmu-miR-130b-3p(1), mmu-miR-467b-5p(1), mmu-miR-680(1), mmu-miR-335-3p(1), mmu-miR-670-5p(1), mmu-miR-7a-2-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ATGACAAAGGCAGGCTTTGAAATAGA
siRNA sets
TCTATTTCAAAGCCTGCCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKRD44_1336_ORF_1
0.971
0.126034964
0.998813851
1347
ORF sequence:
ATGACAAAGGCAGGCTTTGAAATAGACACCCCAGATACGTTTGGAAGAACGTGCCTCCACGCCGCTGCTGCAGGAGGCAATGTAGAATGCATAAAGCTCTTGCAGAGCAGCGGAGCAGATTTTCACAAAAAGGACAAATGTGGGAGAACCCCATTGCACTATGCAGCTGCAAATTGCCATTTCCACTGTATTAAAGCATTAGTGACCACCGGAGCCAACGTTAATGAAACAGACGACTGGGGACGGACAGCTCTGCACTACGCTGCTGCATCAGACATGGATAGAAATAAGATGATCTTAGGAAATGCCCATGACAATTCTGAAGAACTTGAAAGAGCCAGAGAAGTGAAGGAAAAAGATGCTGCACTATGTCTAGAATTTCTGCTTCAAAATGATGCAAACCCATCCATCCGGGACAAGGAAGGCTACAATAGCATCCACTATGCTGCTGCCTATGGCCACAGACAGTGTCTAGAACTGCTTTTGGAAAGAACCAACACTGGCTTTGAAGAATCAGATGGCGGTGCTCTCAAGAGTCCACTCCACTTAGCAGCATACAATGGGCATCACCAAGCCTTGGAGGTCCTTCTCCAGTCCCTAGTGGACCTGGACATCAGGGATGAGAAAGGCCGGACAGCTCTGTACCTAGCTGCTTTCAAGGGACACACAGAATGTGTGGAGGCACTTGTTAACCAGGGCGCATCCATCTTTGTAAAGGACAATGTCACCAAAAGAACTCCACTTCATGCTTCAGTTATTAATGGTCACACACTGTGTTTGAGGCTACTACTTGAAACAGCAGACAATCCGGAAGTGGTTGATGTGAAAGATGCCAAGGGACAAACCCCGCTGATGCTTGCAGTAGCATATGGACACATTGATGCTGTTTCATTGTTACTTGAAAAGGAAGCAAACGTAGATGCGGTCGACATAGTGGGATGCACGGCTTTACATAGAGGGATTATGACAGGACATGAGGAATGTGTGCAAATGCTGCTGGAACAAGAAGCATCAATCCTCTGTAAAGATTCCAGAGGGAGGACACCCTTGCACTATGCGGCTGCTCGGGGCCACGCCACATGGCTGAATGAATTGCTCCAGATTGCCCTTTCTGAAGAAGACTGCTGTCTCAAAGACAACCAGGGATACACGCCACTGCACTGGGCGTGTTACAATGGTAATGAAAACTGCATAGAGGTACTTTTGGAGCAAAAATGTTTTCGAAAATTTATTGGTAATCCCTTCACTCCACTGCACTGTGCAATAATAAATGGTCACGAGAGCTGTGCATCATTGCTCCTGGGGGCCATAGATCCCAGCATTGTCAGCTGCAGGGATGACAAAGGC
Peptide sequence:
MTKAGFEIDTPDTFGRTCLHAAAAGGNVECIKLLQSSGADFHKKDKCGRTPLHYAAANCHFHCIKALVTTGANVNETDDWGRTALHYAAASDMDRNKMILGNAHDNSEELERAREVKEKDAALCLEFLLQNDANPSIRDKEGYNSIHYAAAYGHRQCLELLLERTNTGFEESDGGALKSPLHLAAYNGHHQALEVLLQSLVDLDIRDEKGRTALYLAAFKGHTECVEALVNQGASIFVKDNVTKRTPLHASVINGHTLCLRLLLETADNPEVVDVKDAKGQTPLMLAVAYGHIDAVSLLLEKEANVDAVDIVGCTALHRGIMTGHEECVQMLLEQEASILCKDSRGRTPLHYAAARGHATWLNELLQIALSEEDCCLKDNQGYTPLHWACYNGNENCIEVLLEQKCFRKFIGNPFTPLHCAIINGHESCASLLLGAIDPSIVSCRDDKG
IRESfinder result
IRESfinder score
0.416781122
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page