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mmu_circAnkrd29_591
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkrd29_591
mm39_Chr. Position ID:
chr18|12393990|12415458|-
Gene name:
Ankrd29
Transcript:
ENSMUST00000118525.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
9,8,7,6,5,4
Exon/intron offsets:
0,1178,7516,14772,18756,21369
Genomic length:
21468
Exon/intron sizes in nt:
99,96,99,99,99,99
Flanking exon/introns:
chr18:12387758-12393990|chr18:12415458-12423773
Splice length:
591
Other database IDs:
CIRCpedia: MMU_CIRCpedia_221288, circAtlas: mmu-Ankrd29_0005
CIRCpedia: HSA_CIRCpedia_23448
Human Ortholog IDs:
Mature spliced Sequence:
TCAGGTACAACTGCCCTGTTCTTCGCTGCCCAGCAAGGCCACAATGATGTTGTGAGATTTCTCTTTGGATTTGGAGCATCCACTGAATGTCGGACCAAAGATGGGGGCACTGCCCTGTTGGCTGCTAGTCAGTATGGGCACATGCCAGTGGTGGAGACCTTGCTGAAACATGGAGCCAACATCCATGACCAACTTTATGATGGAGCCACGGCCCTCTTTCTGGCTGCCCAAGGTGGCTACTTGGATGTCATCCGACTACTGCTGTCTTCAGGAGCAAAAGTCAACCAGCCAAGGCAGGATGGAACCGCGCCACTGTGGATCGCCTCCCAGATGGGCCACAGCGAGGTGGTGCGCGTGATGCTGCTGCGGGGAGCTGACCGTGACGCTGCTCGCAACGATGGTACGACAGCATTGCTGAAAGCAGCCAACAAAGGGTATAACGATGTCATAGAGGAGCTGCTCAAATTCTCACCTACTCTTGGTATTTTGAAGAATGGGACTTCGGCTCTCCATGCAGCAGTGCTCAGTGGGAATGTTAAAACGGTTGCCCTGCTCCTGGAAGCAGGGGCAGATCCAGCGTTGAGAAACAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GAATGGGACTTCGGCTCTCC
60.18
CATCATTGTGGCCTTGCTGG
59.83
149
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATGGGACTTCGGCTCTCCAT
60.69
CATCATTGTGGCCTTGCTGG
59.83
147
PCR template sequence:
GAATGGGACTTCGGCTCTCCATGCAGCAGTGCTCAGTGGGAATGTTAAAACGGTTGCCCTGCTCCTGGAAGCAGGGGCAGATCCAGCGTTGAGAAACAAGTCAGGTACAACTGCCCTGTTCTTCGCTGCCCAGCAAGGCCACAATGATGTTGTGAGATTTCTCTTTGGATTTGGAGCATCCACTGAATGTCGGACCAAAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
9
Interacting miRNAs (#binding sites)
mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-103-3p(1), mmu-miR-34a-5p(1), mmu-miR-128-3p(1), mmu-miR-149-5p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-107-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GTTGAGAAACAAGTCAGGTACAACTG
siRNA sets
TTGTACCTGACTTGTTTCT, TGTACCTGACTTGTTTCTC, GTACCTGACTTGTTTCTCA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKRD29_591_ORF_1
1.028
0.333857666
0.996002827
1041
ORF sequence:
ATGCCAGTGGTGGAGACCTTGCTGAAACATGGAGCCAACATCCATGACCAACTTTATGATGGAGCCACGGCCCTCTTTCTGGCTGCCCAAGGTGGCTACTTGGATGTCATCCGACTACTGCTGTCTTCAGGAGCAAAAGTCAACCAGCCAAGGCAGGATGGAACCGCGCCACTGTGGATCGCCTCCCAGATGGGCCACAGCGAGGTGGTGCGCGTGATGCTGCTGCGGGGAGCTGACCGTGACGCTGCTCGCAACGATGGTACGACAGCATTGCTGAAAGCAGCCAACAAAGGGTATAACGATGTCATAGAGGAGCTGCTCAAATTCTCACCTACTCTTGGTATTTTGAAGAATGGGACTTCGGCTCTCCATGCAGCAGTGCTCAGTGGGAATGTTAAAACGGTTGCCCTGCTCCTGGAAGCAGGGGCAGATCCAGCGTTGAGAAACAAGTCAGGTACAACTGCCCTGTTCTTCGCTGCCCAGCAAGGCCACAATGATGTTGTGAGATTTCTCTTTGGATTTGGAGCATCCACTGAATGTCGGACCAAAGATGGGGGCACTGCCCTGTTGGCTGCTAGTCAGTATGGGCACATGCCAGTGGTGGAGACCTTGCTGAAACATGGAGCCAACATCCATGACCAACTTTATGATGGAGCCACGGCCCTCTTTCTGGCTGCCCAAGGTGGCTACTTGGATGTCATCCGACTACTGCTGTCTTCAGGAGCAAAAGTCAACCAGCCAAGGCAGGATGGAACCGCGCCACTGTGGATCGCCTCCCAGATGGGCCACAGCGAGGTGGTGCGCGTGATGCTGCTGCGGGGAGCTGACCGTGACGCTGCTCGCAACGATGGTACGACAGCATTGCTGAAAGCAGCCAACAAAGGGTATAACGATGTCATAGAGGAGCTGCTCAAATTCTCACCTACTCTTGGTATTTTGAAGAATGGGACTTCGGCTCTCCATGCAGCAGTGCTCAGTGGGAATGTTAAAACGGTTGCCCTGCTCCTGGAAGCAGGGGCAGATCCAGCGTTGAGAAACAAG
Peptide sequence:
MPVVETLLKHGANIHDQLYDGATALFLAAQGGYLDVIRLLLSSGAKVNQPRQDGTAPLWIASQMGHSEVVRVMLLRGADRDAARNDGTTALLKAANKGYNDVIEELLKFSPTLGILKNGTSALHAAVLSGNVKTVALLLEAGADPALRNKSGTTALFFAAQQGHNDVVRFLFGFGASTECRTKDGGTALLAASQYGHMPVVETLLKHGANIHDQLYDGATALFLAAQGGYLDVIRLLLSSGAKVNQPRQDGTAPLWIASQMGHSEVVRVMLLRGADRDAARNDGTTALLKAANKGYNDVIEELLKFSPTLGILKNGTSALHAAVLSGNVKTVALLLEAGADPALRNK
IRESfinder result
IRESfinder score
0.208448421
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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