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mmu_circAnkrd27_1443
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkrd27_1443
mm39_Chr. Position ID:
chr7|35313879|35330729|+
Gene name:
Ankrd27
Transcript:
ENSMUST00000040844.16
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
12
Exon/intron indexes:
14,15,16,17,18,19,20,21,22,23,24,25
Exon/intron offsets:
0,573,1393,2392,4860,5903,6088,7850,11192,12949,13972,16688
Genomic length:
16850
Exon/intron sizes in nt:
1,28,83,11,69,31,98,60,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr7:35311980-35313879|chr7:35330729-35332361
Splice length:
1443
Other database IDs:
CIRCpedia: MMU_CIRCpedia_221147, circAtlas: mmu-Ankrd27_0022
CIRCpedia: HSA_CIRCpedia_25444
Human Ortholog IDs:
Mature spliced Sequence:
CACATCGCCTCTGGTAACCAAAAGGAAGTGGAAAGACTTCTGAGCCAAGATGACCAGGACAAAGACGCCATGCAAAAGATGTGCCACCCACTTTGTTCCTGTGAGGACTGTGAGAAGCTTATCTCTGGGAGGCTGAATGACCCGTCAGTTGTCACTCCTTTCTCCAGAGATGACAGAGGTCAAACACCCCTCCATGTGGCTGCCCTCTGTGGTCAGGCATCCCTCATTGACTTCCTGGTCTCCAAAGGTGCCGTAGTGAACGCCACAGACTATCATGGGTCCACCCCCTTACATCTGGCATGTCAGAAAGGCTTCCAAAGTGTGACGCTGCTGCTGCTGCACTACAAGGCCAGCACTGAGGTTCAGGACAACAACGGCAACACCCCGCTGCACCTGGCCTGCACCTATGGGCAGGAGGATTGCGTGAAGGCCCTGGTCTACTATGATGTCCAGGCCTGCAGATTGGATATTGGTAATGAGAAAGGAGACACAGCCCTGCACATTGCTGCACGCTGGGGTTACGAGGGCATCATAGAGACACTGCTGCAGAATGGAGCCCCCACAGCAGTCCAGAACAGACTGAAGGAAACACCACTCAAGTGTGCTCTGAACTCGAAGATTCTGTCTATCATGGAAGCTCATCACCTATCCTCTGACAGGAGGCCAAGGCCTTCTGAGGTTCCTGCACAGTCCCCTACACGCTCTGTGGATTCCATCAGCCAGGGCTCCTCCACCTCCAGCTTTTCTTCCATATCGGTGAGCTTCAGGCAAGAAGAGGTCAAAAAGGACTACAGGGAGGTAGAAAAGCTTCTAAGGGCAGTTGCTGATGGCGATCTAGAAATGGTACGATACCTTTTGGAGTGGACAGAGGATGACCTAGACGATGTGGAAGACGCCATCAGCACGGTGGATCTCGAATTCTGTCACCCCTTATGCCAGTGTCCCAAGTGTGCTCCAGCTCAGAAACTGGCCAGGATTTCTGCCAATGGGCTTAGTGTGAATGTGACCAACCAGGACGGCTTCTCTCCCCTGCACATGGCTGCCCTGCATGGCCGCACAGACCTCGTCCCCCTCCTGCTGAAGCACGGTGCTTACTCAGGTGCCAGAAACACAAGCCAAGCCGTCCCGCTCCACCTGGCCTGCCAGCAGGGGCACTTTCAGGTGGCAAAATGTCTCTTAGATTCCAATGCAAAACCTAATAAAAAGGACCTCAGTGGGAACACACCCCTCATTTGTGCCTGCTCTGCCGGCCACCATGAAGTCGCTGCGCTGTTGCTACAGCACGGGGCCTCCATCAATGCTTGCAACAACAAAGGCAACACGGCCCTGCATGAGGCTGTGATGGGAAGGCACACCCTGGTAGTGGAGCTGCTTCTGTTCTACGGGGCGTCGGTTGACATCCTGAACAAGAGGCAGTACACGGCGGCGGACTGTGCCGAGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCTGGTAGTGGAGCTGCTTC
60.11
TGGCACATCTTTTGCATGGC
60.04
174
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGCTGCTTCTGTTCTACGGG
59.75
TGGCACATCTTTTGCATGGC
60.04
163
PCR template sequence:
GGGAAGGCACACCCTGGTAGTGGAGCTGCTTCTGTTCTACGGGGCGTCGGTTGACATCCTGAACAAGAGGCAGTACACGGCGGCGGACTGTGCCGAGCAGCACATCGCCTCTGGTAACCAAAAGGAAGTGGAAAGACTTCTGAGCCAAGATGACCAGGACAAAGACGCCATGCAAAAGATGTGCCACCCACTTTGTTCCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
17
Interacting miRNAs (#binding sites)
mmu-miR-20b-5p(1), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-103-3p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-320-3p(1), mmu-miR-185-5p(1), mmu-miR-181b-5p(1), mmu-miR-676-3p(1), mmu-miR-127-5p(1), mmu-miR-107-3p(1), mmu-miR-673-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CTGTGCCGAGCAGCACATCGCCTCTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKRD27_1443_ORF_1
1.1662
0.298922838
0.99999999
2817
ORF sequence:
ATGCAAAAGATGTGCCACCCACTTTGTTCCTGTGAGGACTGTGAGAAGCTTATCTCTGGGAGGCTGAATGACCCGTCAGTTGTCACTCCTTTCTCCAGAGATGACAGAGGTCAAACACCCCTCCATGTGGCTGCCCTCTGTGGTCAGGCATCCCTCATTGACTTCCTGGTCTCCAAAGGTGCCGTAGTGAACGCCACAGACTATCATGGGTCCACCCCCTTACATCTGGCATGTCAGAAAGGCTTCCAAAGTGTGACGCTGCTGCTGCTGCACTACAAGGCCAGCACTGAGGTTCAGGACAACAACGGCAACACCCCGCTGCACCTGGCCTGCACCTATGGGCAGGAGGATTGCGTGAAGGCCCTGGTCTACTATGATGTCCAGGCCTGCAGATTGGATATTGGTAATGAGAAAGGAGACACAGCCCTGCACATTGCTGCACGCTGGGGTTACGAGGGCATCATAGAGACACTGCTGCAGAATGGAGCCCCCACAGCAGTCCAGAACAGACTGAAGGAAACACCACTCAAGTGTGCTCTGAACTCGAAGATTCTGTCTATCATGGAAGCTCATCACCTATCCTCTGACAGGAGGCCAAGGCCTTCTGAGGTTCCTGCACAGTCCCCTACACGCTCTGTGGATTCCATCAGCCAGGGCTCCTCCACCTCCAGCTTTTCTTCCATATCGGTGAGCTTCAGGCAAGAAGAGGTCAAAAAGGACTACAGGGAGGTAGAAAAGCTTCTAAGGGCAGTTGCTGATGGCGATCTAGAAATGGTACGATACCTTTTGGAGTGGACAGAGGATGACCTAGACGATGTGGAAGACGCCATCAGCACGGTGGATCTCGAATTCTGTCACCCCTTATGCCAGTGTCCCAAGTGTGCTCCAGCTCAGAAACTGGCCAGGATTTCTGCCAATGGGCTTAGTGTGAATGTGACCAACCAGGACGGCTTCTCTCCCCTGCACATGGCTGCCCTGCATGGCCGCACAGACCTCGTCCCCCTCCTGCTGAAGCACGGTGCTTACTCAGGTGCCAGAAACACAAGCCAAGCCGTCCCGCTCCACCTGGCCTGCCAGCAGGGGCACTTTCAGGTGGCAAAATGTCTCTTAGATTCCAATGCAAAACCTAATAAAAAGGACCTCAGTGGGAACACACCCCTCATTTGTGCCTGCTCTGCCGGCCACCATGAAGTCGCTGCGCTGTTGCTACAGCACGGGGCCTCCATCAATGCTTGCAACAACAAAGGCAACACGGCCCTGCATGAGGCTGTGATGGGAAGGCACACCCTGGTAGTGGAGCTGCTTCTGTTCTACGGGGCGTCGGTTGACATCCTGAACAAGAGGCAGTACACGGCGGCGGACTGTGCCGAGCAGCACATCGCCTCTGGTAACCAAAAGGAAGTGGAAAGACTTCTGAGCCAAGATGACCAGGACAAAGACGCCATGCAAAAGATGTGCCACCCACTTTGTTCCTGTGAGGACTGTGAGAAGCTTATCTCTGGGAGGCTGAATGACCCGTCAGTTGTCACTCCTTTCTCCAGAGATGACAGAGGTCAAACACCCCTCCATGTGGCTGCCCTCTGTGGTCAGGCATCCCTCATTGACTTCCTGGTCTCCAAAGGTGCCGTAGTGAACGCCACAGACTATCATGGGTCCACCCCCTTACATCTGGCATGTCAGAAAGGCTTCCAAAGTGTGACGCTGCTGCTGCTGCACTACAAGGCCAGCACTGAGGTTCAGGACAACAACGGCAACACCCCGCTGCACCTGGCCTGCACCTATGGGCAGGAGGATTGCGTGAAGGCCCTGGTCTACTATGATGTCCAGGCCTGCAGATTGGATATTGGTAATGAGAAAGGAGACACAGCCCTGCACATTGCTGCACGCTGGGGTTACGAGGGCATCATAGAGACACTGCTGCAGAATGGAGCCCCCACAGCAGTCCAGAACAGACTGAAGGAAACACCACTCAAGTGTGCTCTGAACTCGAAGATTCTGTCTATCATGGAAGCTCATCACCTATCCTCTGACAGGAGGCCAAGGCCTTCTGAGGTTCCTGCACAGTCCCCTACACGCTCTGTGGATTCCATCAGCCAGGGCTCCTCCACCTCCAGCTTTTCTTCCATATCGGTGAGCTTCAGGCAAGAAGAGGTCAAAAAGGACTACAGGGAGGTAGAAAAGCTTCTAAGGGCAGTTGCTGATGGCGATCTAGAAATGGTACGATACCTTTTGGAGTGGACAGAGGATGACCTAGACGATGTGGAAGACGCCATCAGCACGGTGGATCTCGAATTCTGTCACCCCTTATGCCAGTGTCCCAAGTGTGCTCCAGCTCAGAAACTGGCCAGGATTTCTGCCAATGGGCTTAGTGTGAATGTGACCAACCAGGACGGCTTCTCTCCCCTGCACATGGCTGCCCTGCATGGCCGCACAGACCTCGTCCCCCTCCTGCTGAAGCACGGTGCTTACTCAGGTGCCAGAAACACAAGCCAAGCCGTCCCGCTCCACCTGGCCTGCCAGCAGGGGCACTTTCAGGTGGCAAAATGTCTCTTAGATTCCAATGCAAAACCTAATAAAAAGGACCTCAGTGGGAACACACCCCTCATTTGTGCCTGCTCTGCCGGCCACCATGAAGTCGCTGCGCTGTTGCTACAGCACGGGGCCTCCATCAATGCTTGCAACAACAAAGGCAACACGGCCCTGCATGAGGCTGTGATGGGAAGGCACACCCTGGTAGTGGAGCTGCTTCTGTTCTACGGGGCGTCGGTTGACATCCTGAACAAGAGGCAGTACACGGCGGCGGACTGTGCCGAGCAG
Peptide sequence:
MQKMCHPLCSCEDCEKLISGRLNDPSVVTPFSRDDRGQTPLHVAALCGQASLIDFLVSKGAVVNATDYHGSTPLHLACQKGFQSVTLLLLHYKASTEVQDNNGNTPLHLACTYGQEDCVKALVYYDVQACRLDIGNEKGDTALHIAARWGYEGIIETLLQNGAPTAVQNRLKETPLKCALNSKILSIMEAHHLSSDRRPRPSEVPAQSPTRSVDSISQGSSTSSFSSISVSFRQEEVKKDYREVEKLLRAVADGDLEMVRYLLEWTEDDLDDVEDAISTVDLEFCHPLCQCPKCAPAQKLARISANGLSVNVTNQDGFSPLHMAALHGRTDLVPLLLKHGAYSGARNTSQAVPLHLACQQGHFQVAKCLLDSNAKPNKKDLSGNTPLICACSAGHHEVAALLLQHGASINACNNKGNTALHEAVMGRHTLVVELLLFYGASVDILNKRQYTAADCAEQHIASGNQKEVERLLSQDDQDKDAMQKMCHPLCSCEDCEKLISGRLNDPSVVTPFSRDDRGQTPLHVAALCGQASLIDFLVSKGAVVNATDYHGSTPLHLACQKGFQSVTLLLLHYKASTEVQDNNGNTPLHLACTYGQEDCVKALVYYDVQACRLDIGNEKGDTALHIAARWGYEGIIETLLQNGAPTAVQNRLKETPLKCALNSKILSIMEAHHLSSDRRPRPSEVPAQSPTRSVDSISQGSSTSSFSSISVSFRQEEVKKDYREVEKLLRAVADGDLEMVRYLLEWTEDDLDDVEDAISTVDLEFCHPLCQCPKCAPAQKLARISANGLSVNVTNQDGFSPLHMAALHGRTDLVPLLLKHGAYSGARNTSQAVPLHLACQQGHFQVAKCLLDSNAKPNKKDLSGNTPLICACSAGHHEVAALLLQHGASINACNNKGNTALHEAVMGRHTLVVELLLFYGASVDILNKRQYTAADCAEQ
IRESfinder result
IRESfinder score
0.310989216
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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