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mmu_circAnkrd26_781
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkrd26_781
mm39_Chr. Position ID:
chr6|118482686|118485741|-
Gene name:
Ankrd26
Transcript:
ENSMUST00000112830.3
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
33,32,31,30
Exon/intron offsets:
0,650,1912,2764
Genomic length:
3055
Exon/intron sizes in nt:
46,22,92,15,291
Flanking exon/introns:
chr6:118480117-118482686|chr6:118485741-118488526
Splice length:
781
Other database IDs:
CIRCpedia: MMU_CIRCpedia_4512, circAtlas: mmu-Ankrd26_0002
circAtlas: hsa-ANKRD26_0044, CIRCpedia: HSA_CIRCpedia_150005
Human Ortholog IDs:
Mature spliced Sequence:
ATTGATGATCTTACAGCAAAACTGGAAACTGCATCTTCAAAATGTCTACATCTGGGTAAAAAAAATCAGCTGCTTCAGCAGGAGTTACTATTGATGAGGACTATACAAAAGAAGTGTGGGAAACTAGAGAAGAATAAAAAGCAATTGGAGCAGGAGGTCGTGAACCTCAGAAGTCACATGGAGAAGAACATGGTGGAGCACAGCCAAGCACAGCAGTACGCGCGGGAGGTCGAAGAGCGAGCGAGGCAGGACTTGGTGGAAAAGTTAAAACAGGTCAACCTCTTCCTGCAGGCTCAAGCAGCATCCCAGGAGAGCTTGGAGCAGTTAAGAGAGAACAGTAACGCTTCGGTTAGAAGTCAGATGGAGCTCAGGATTAAAGACCTGGAGTCCCAGCTCTACAGAATGAAAGCCCAGGAAGACTTCGATAAAATAGAACTGGAAAAGTATAAGCAGCTCTACCAGGAAGAGTTCAGAGCTAGAAAATCGCTGTCAAGTAAACTAAACAAGACCAGTGAGAAGCTGGAGGAGGCCAGCAGCAAGCTGCTCCTGGAGGAGCAGCAGAACAGGTCCTTGCTGAGCACTCTGAGTACAAGGCCTGTTGTGGAGTGTCCTTGTGTTGGAAGTTTCCATAATAGTTTGGTATTCAACAGAACTCTTATTCCAAGAGAAAACATAGTGGTTCCTACTTCAGGCCTACAGCCATCAAATAAGAGAGTGGAGATCTACCTGACCAAGATGCATCAAGAGTTGGAAAAAAGTATAAATAGAGAACTTAAAGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACCTGACCAAGATGCATCAAGA
59.69
TCAATAGTAACTCCTGCTGAAGC
58.24
151
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGAGTGGAGATCTACCTGACCA
59.42
TCAATAGTAACTCCTGCTGAAGC
58.24
164
PCR template sequence:
CCTACTTCAGGCCTACAGCCATCAAATAAGAGAGTGGAGATCTACCTGACCAAGATGCATCAAGAGTTGGAAAAAAGTATAAATAGAGAACTTAAAGAAGATTGATGATCTTACAGCAAAACTGGAAACTGCATCTTCAAAATGTCTACATCTGGGTAAAAAAAATCAGCTGCTTCAGCAGGAGTTACTATTGATGAGGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-370-3p(1), mmu-miR-5101(1), mmu-miR-1904(1), mmu-miR-3105-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GAACTTAAAGAAGATTGATGATCTTA
siRNA sets
TCATCAATCTTCTTTAAGT,ATCAATCTTCTTTAAGTTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKRD26_781_ORF_1
1.2197
0.254787232
0.953965292
693
ORF sequence:
ATGAGGACTATACAAAAGAAGTGTGGGAAACTAGAGAAGAATAAAAAGCAATTGGAGCAGGAGGTCGTGAACCTCAGAAGTCACATGGAGAAGAACATGGTGGAGCACAGCCAAGCACAGCAGTACGCGCGGGAGGTCGAAGAGCGAGCGAGGCAGGACTTGGTGGAAAAGTTAAAACAGGTCAACCTCTTCCTGCAGGCTCAAGCAGCATCCCAGGAGAGCTTGGAGCAGTTAAGAGAGAACAGTAACGCTTCGGTTAGAAGTCAGATGGAGCTCAGGATTAAAGACCTGGAGTCCCAGCTCTACAGAATGAAAGCCCAGGAAGACTTCGATAAAATAGAACTGGAAAAGTATAAGCAGCTCTACCAGGAAGAGTTCAGAGCTAGAAAATCGCTGTCAAGTAAACTAAACAAGACCAGTGAGAAGCTGGAGGAGGCCAGCAGCAAGCTGCTCCTGGAGGAGCAGCAGAACAGGTCCTTGCTGAGCACTCTGAGTACAAGGCCTGTTGTGGAGTGTCCTTGTGTTGGAAGTTTCCATAATAGTTTGGTATTCAACAGAACTCTTATTCCAAGAGAAAACATAGTGGTTCCTACTTCAGGCCTACAGCCATCAAATAAGAGAGTGGAGATCTACCTGACCAAGATGCATCAAGAGTTGGAAAAAAGTATAAATAGAGAACTTAAAGAAGATTGA
Peptide sequence:
MRTIQKKCGKLEKNKKQLEQEVVNLRSHMEKNMVEHSQAQQYAREVEERARQDLVEKLKQVNLFLQAQAASQESLEQLRENSNASVRSQMELRIKDLESQLYRMKAQEDFDKIELEKYKQLYQEEFRARKSLSSKLNKTSEKLEEASSKLLLEEQQNRSLLSTLSTRPVVECPCVGSFHNSLVFNRTLIPRENIVVPTSGLQPSNKRVEIYLTKMHQELEKSINRELKED
IRESfinder result
IRESfinder score
0.502050064
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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