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mmu_circAnkrd26_1076
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkrd26_1076
mm39_Chr. Position ID:
chr6|118504616|118519944|-
Gene name:
Ankrd26
Transcript:
ENSMUST00000112830.3
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
10
Exon/intron indexes:
21,20,19,18,17,16,15,14,13,12
Exon/intron offsets:
0,1778,2187,4546,5659,7423,12030,12191,12795,15234
Genomic length:
15328
Exon/intron sizes in nt:
214,142,34,168,152,65,79,29,99,94
Flanking exon/introns:
chr6:118502877-118504616|chr6:118519944-118525274
Splice length:
1076
Other database IDs:
circAtlas: hsa-ANKRD26_0125
Human Ortholog IDs:
Mature spliced Sequence:
AGTATCTCCGAGAGTGTGTCACTGAAAGACGTAGGTCACTTCTCTGGGACTGCAGATCAAACGGGAAAAAGGAGAGCACATGGACAGATAGAAGATGTGACTTATATACCTTCTTGCATGAGTGGATCAAGAAGCTTTAAAATGGCTAAACTAGAGGAGTCAAGAAATGTAGGCCTTCCGGTAGCCCACATGGAGGCCCCCAGGAAATATGCAATCATGGAGCCTACCATCGAAAGGAGGGCTCCTGTTCTGAACAAAACGGAGACAGTGGGAATGACGGATGCACAGACTTTCAAGTCAGAGCCAGAATCAGTATCAAGAGAAGAACAGACAAGGCTCAGTGGCAGCGAGGACAGCCAGCAGAAGGTTGAAGAAAAGAGAAAATACAAAAATAACGAAGCAGAACCCTCAGGAAATCTATACAGCGGTGCTGCTGACGGCGGTGCTGATGTAAAGCCACAGAGTGGAGACACTGAGAACCAGCAGTCTCCCCGGGAGGGGAGTGAGGGACGTGGCAGTGGTCCTGCCTTGCTTATGAAGGAAGCAAAGAAAATGGAAAATGAAAAATGGGTATCCAGAGAGCCCGCGAGGACGGCAATGAGTGAGCGCACCGGCTTACCAACTGGTGGCTGGCCACAAATGCAGGATGGTTCCTGCTGGAGTGACACGGACCAAAGTGAAGCCAGGCCCACAAAGAAAACATCTAGTAAACATAACAAGGACAGCGGGCAGACAGCTGCAGTGGACAACCTTGACGACTTTACTGAGTCGTCTGAAACAGCCTCTGAGGACCATGAGCTCCAGGGCCCTGATTCCGAGAGCATTTTGTGTGCGATCGAGCATCTCAGACTGGAGTGTAAAGATACTGCTAGTCTATTGAAAATCCGGGATGCCGTTTATTCATATAAACGATTAATAGAACTTAAAAGAAGCCACTGTGAACTACTTACAGGAAAACTGAAAAGAATGGAAAACAAATATAAGGGATTGCAGAAGGAAATGTCAGAGACAGAAGAAGTGAAGTCACGGTTGGAACATGAAAAGGTCGGATGGGAACAGGAGCTCTGCAGGCTGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTGAAGTCACGGTTGGAACA
58.34
ATGTGCTCTCCTTTTTCCCGT
59.93
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTGAAGTCACGGTTGGAACATG
60.03
ATGTGCTCTCCTTTTTCCCGT
59.93
140
PCR template sequence:
AATATAAGGGATTGCAGAAGGAAATGTCAGAGACAGAAGAAGTGAAGTCACGGTTGGAACATGAAAAGGTCGGATGGGAACAGGAGCTCTGCAGGCTGAGAGTATCTCCGAGAGTGTGTCACTGAAAGACGTAGGTCACTTCTCTGGGACTGCAGATCAAACGGGAAAAAGGAGAGCACATGGACAGATAGAAGATGTGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
12
Interacting miRNAs (#binding sites)
mmu-miR-149-5p(2), mmu-miR-16-5p(1), mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-214-3p(1), mmu-miR-192-5p(1), mmu-miR-215-5p(1), mmu-miR-207(1), mmu-miR-5101(1), mmu-miR-335-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TCTGCAGGCTGAGAGTATCTCCGAGA
siRNA sets
AGATACTCTCAGCCTGCAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKRD26_1076_ORF_1
0.8468
0.175077848
0.992912587
1101
ORF sequence:
ATGGGAACAGGAGCTCTGCAGGCTGAGAGTATCTCCGAGAGTGTGTCACTGAAAGACGTAGGTCACTTCTCTGGGACTGCAGATCAAACGGGAAAAAGGAGAGCACATGGACAGATAGAAGATGTGACTTATATACCTTCTTGCATGAGTGGATCAAGAAGCTTTAAAATGGCTAAACTAGAGGAGTCAAGAAATGTAGGCCTTCCGGTAGCCCACATGGAGGCCCCCAGGAAATATGCAATCATGGAGCCTACCATCGAAAGGAGGGCTCCTGTTCTGAACAAAACGGAGACAGTGGGAATGACGGATGCACAGACTTTCAAGTCAGAGCCAGAATCAGTATCAAGAGAAGAACAGACAAGGCTCAGTGGCAGCGAGGACAGCCAGCAGAAGGTTGAAGAAAAGAGAAAATACAAAAATAACGAAGCAGAACCCTCAGGAAATCTATACAGCGGTGCTGCTGACGGCGGTGCTGATGTAAAGCCACAGAGTGGAGACACTGAGAACCAGCAGTCTCCCCGGGAGGGGAGTGAGGGACGTGGCAGTGGTCCTGCCTTGCTTATGAAGGAAGCAAAGAAAATGGAAAATGAAAAATGGGTATCCAGAGAGCCCGCGAGGACGGCAATGAGTGAGCGCACCGGCTTACCAACTGGTGGCTGGCCACAAATGCAGGATGGTTCCTGCTGGAGTGACACGGACCAAAGTGAAGCCAGGCCCACAAAGAAAACATCTAGTAAACATAACAAGGACAGCGGGCAGACAGCTGCAGTGGACAACCTTGACGACTTTACTGAGTCGTCTGAAACAGCCTCTGAGGACCATGAGCTCCAGGGCCCTGATTCCGAGAGCATTTTGTGTGCGATCGAGCATCTCAGACTGGAGTGTAAAGATACTGCTAGTCTATTGAAAATCCGGGATGCCGTTTATTCATATAAACGATTAATAGAACTTAAAAGAAGCCACTGTGAACTACTTACAGGAAAACTGAAAAGAATGGAAAACAAATATAAGGGATTGCAGAAGGAAATGTCAGAGACAGAAGAAGTGAAGTCACGGTTGGAACATGAAAAGGTCGGATGGGAACAGGAGCTCTGCAGGCTG
Peptide sequence:
MGTGALQAESISESVSLKDVGHFSGTADQTGKRRAHGQIEDVTYIPSCMSGSRSFKMAKLEESRNVGLPVAHMEAPRKYAIMEPTIERRAPVLNKTETVGMTDAQTFKSEPESVSREEQTRLSGSEDSQQKVEEKRKYKNNEAEPSGNLYSGAADGGADVKPQSGDTENQQSPREGSEGRGSGPALLMKEAKKMENEKWVSREPARTAMSERTGLPTGGWPQMQDGSCWSDTDQSEARPTKKTSSKHNKDSGQTAAVDNLDDFTESSETASEDHELQGPDSESILCAIEHLRLECKDTASLLKIRDAVYSYKRLIELKRSHCELLTGKLKRMENKYKGLQKEMSETEEVKSRLEHEKVGWEQELCRL
IRESfinder result
IRESfinder score
0.37201814
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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