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mmu_circAnkrd17_989
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkrd17_989
mm39_Chr. Position ID:
chr5|90400725|90408039|-
Gene name:
Ankrd17
Transcript:
ENSMUST00000014421.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
27,26,25,24,23
Exon/intron offsets:
0,628,1773,5567,7218
Genomic length:
7314
Exon/intron sizes in nt:
156,448,172,117,96
Flanking exon/introns:
chr5:90398383-90400725|chr5:90408039-90411117
Splice length:
989
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GGTCATGTGAAGGTGGTGCGCTACTTAGTCAAAGAGGTCAATCAGTTTCCATCAGATTCGGAATGCATGAGGTATATAGCAACCATCACTGATAAGGAGATGCTGAAGAAGTGTCATCTTTGTATGGAGTCAATAGTACAAGCCAAAGACAGGCAGGCTGCTGAAGCAAATAAGAATGCCAGCATACTACTGGAGGAGCTAGACCTGGAAAAGTTAAGGGAAGAAAGTCGAAGGCTGGCTTTGGCTGCTAAAAGAGAAAAGCGAAAAGAGAAAAGAAGGAAAAAAAAGGAAGAACAAAGAAGGAAATTAGAGGAAATTGAAGCCAAAAATAAGGAGAACTTTGAACTTCAAGCTGCTCAAGAAAAAGAGAAACTTAAAGTTGAAGAAGAACCTGAAGTCTTGACAGAGCCTCCAAGTGCCACTACCACCACTACCATAGGAATATCTGCTACATGGACTACTTTGGCAGGTTCCCATGGTAAAAGAAATAATACCATAACTACAACCAGCTCAAAGAGGAAAAACAGGAAAAATAAAATTACTCCAGAAAATGTTCAAATTATATTTGATGATCCACTACCAATCTCGTACAGTCAGCCAGAGAAGGTGAATGGAGAGTCCAAGAGCAGCAGCACCAGCGAGAGTGGGGACAGTGACAACATGAGGATTTCCAGCTGCAGTGACGAGAGCAGCAACAGCAACAGCAGCAGAAAGAGTAACAATCATGCGTCGGCTGTGGTCACGACCACTATGGCCAGCAAGAAGCAGCCGTCTGTTCTTGTTACATTTCCAAAAGAGGAGAGAAAATCCGTTTCGGGCAAGGCTTCTATAAAATTGTCAGAGACTGTCAATGAAGGGACCAGTAATTCTCTGTCAACTTGTACAAAATCTGGTCCGTCTCCTCTTTCCTCTCCAAATGGGAAGTTAACAGTAGCAAGTCCTAAGCGTGGGCCAAAGAGGGAAGAAGGATGGAAGGAGGTCGTAAGGCG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGTCCGTCTCCTCTTTCCT
59.89
ACCTCATGCATTCCGAATCTGA
59.83
172
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGTCCGTCTCCTCTTTCCT
59.89
ACCTCATGCATTCCGAATCTG
58.43
172
PCR template sequence:
CTGGTCCGTCTCCTCTTTCCTCTCCAAATGGGAAGTTAACAGTAGCAAGTCCTAAGCGTGGGCCAAAGAGGGAAGAAGGATGGAAGGAGGTCGTAAGGCGGGTCATGTGAAGGTGGTGCGCTACTTAGTCAAAGAGGTCAATCAGTTTCCATCAGATTCGGAATGCATGAGGTATATAGCAACCATCACTGATAAGGAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-138-5p(1), mmu-miR-136-5p(1), mmu-miR-411-3p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
AGGTCGTAAGGCGGGTCATGTGAAGG
siRNA sets
TCACATGACCCGCCTTACG,ACATGACCCGCCTTACGAC,TTCACATGACCCGCCTTAC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKRD17_989_ORF_1
1.0634
0.16570854
0.990432603
1008
ORF sequence:
ATGGAAGGAGGTCGTAAGGCGGGTCATGTGAAGGTGGTGCGCTACTTAGTCAAAGAGGTCAATCAGTTTCCATCAGATTCGGAATGCATGAGGTATATAGCAACCATCACTGATAAGGAGATGCTGAAGAAGTGTCATCTTTGTATGGAGTCAATAGTACAAGCCAAAGACAGGCAGGCTGCTGAAGCAAATAAGAATGCCAGCATACTACTGGAGGAGCTAGACCTGGAAAAGTTAAGGGAAGAAAGTCGAAGGCTGGCTTTGGCTGCTAAAAGAGAAAAGCGAAAAGAGAAAAGAAGGAAAAAAAAGGAAGAACAAAGAAGGAAATTAGAGGAAATTGAAGCCAAAAATAAGGAGAACTTTGAACTTCAAGCTGCTCAAGAAAAAGAGAAACTTAAAGTTGAAGAAGAACCTGAAGTCTTGACAGAGCCTCCAAGTGCCACTACCACCACTACCATAGGAATATCTGCTACATGGACTACTTTGGCAGGTTCCCATGGTAAAAGAAATAATACCATAACTACAACCAGCTCAAAGAGGAAAAACAGGAAAAATAAAATTACTCCAGAAAATGTTCAAATTATATTTGATGATCCACTACCAATCTCGTACAGTCAGCCAGAGAAGGTGAATGGAGAGTCCAAGAGCAGCAGCACCAGCGAGAGTGGGGACAGTGACAACATGAGGATTTCCAGCTGCAGTGACGAGAGCAGCAACAGCAACAGCAGCAGAAAGAGTAACAATCATGCGTCGGCTGTGGTCACGACCACTATGGCCAGCAAGAAGCAGCCGTCTGTTCTTGTTACATTTCCAAAAGAGGAGAGAAAATCCGTTTCGGGCAAGGCTTCTATAAAATTGTCAGAGACTGTCAATGAAGGGACCAGTAATTCTCTGTCAACTTGTACAAAATCTGGTCCGTCTCCTCTTTCCTCTCCAAATGGGAAGTTAACAGTAGCAAGTCCTAAGCGTGGGCCAAAGAGGGAAGAAGGATGGAAGGAGGTCGTAAGG
Peptide sequence:
MEGGRKAGHVKVVRYLVKEVNQFPSDSECMRYIATITDKEMLKKCHLCMESIVQAKDRQAAEANKNASILLEELDLEKLREESRRLALAAKREKRKEKRRKKKEEQRRKLEEIEAKNKENFELQAAQEKEKLKVEEEPEVLTEPPSATTTTTIGISATWTTLAGSHGKRNNTITTTSSKRKNRKNKITPENVQIIFDDPLPISYSQPEKVNGESKSSSTSESGDSDNMRISSCSDESSNSNSSRKSNNHASAVVTTTMASKKQPSVLVTFPKEERKSVSGKASIKLSETVNEGTSNSLSTCTKSGPSPLSSPNGKLTVASPKRGPKREEGWKEVVR
IRESfinder result
IRESfinder score
0.462343344
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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