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mmu_circAnkrd17_902
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkrd17_902
mm39_Chr. Position ID:
chr5|90426101|90431462|-
Gene name:
Ankrd17
Transcript:
ENSMUST00000014421.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
16,15
Exon/intron offsets:
0,4608
Genomic length:
5361
Exon/intron sizes in nt:
1,49,753
Flanking exon/introns:
chr5:90416608-90426101|chr5:90431462-90432899
Splice length:
902
Other database IDs:
circAtlas: mmu-Ankrd17_0032
circAtlas: hsa-ANKRD17_0046
Human Ortholog IDs:
Mature spliced Sequence:
CTGCTTCTAAACAAAAGTCCAACAGCCATTTGCCAGCAAACAGCCAGGATGTACAGGGTTACATCACCAATCAGTCTCCAGAGAGCATTGTAGAAGAGGCTCAGGGAAAGTTAACAGAACTGGAACAGAGGATAAAAGAAGCCATAGAAAAAAATGCACAGCTGCAGTCCTTGGAGCTGGCTCATGCTGACCAACTCACCAAGGAGAAGATCGAGGAGCTGAACAAAACGAGGGAGGAACAAATTCAGAAGAAGCAAAAGATTCTGGAGGAGCTGCAGAAAGTAGAGCGAGAGCTACAACTGAAAACTCAGCAGCAGCTTAAAAAACAGTATCTAGAAGTTAAAGCTCAACGAATTCAGCTTCAGCAGCAGCAGCAACAGTCTTGCCAGCATCTGGGACTATTTACTTCTGTTGGGGTTGGAGAGCAGCTTTCCGAGGGAGACTATGCACGGTTACAGCAAGTGGATCCTGTTTTGCTTAAAGATGAACCCCAGCAGACTGCTGCTCAGATGGGTTTTGCACCAATCCAGCCTCTGGCGATGCCTCAAGCTTTGCCTCTGGCAACGGGTCCCTTGCCTCCAGGGTCCATCGCAAATCTTACAGAACTTCAAGGAGTGATAGTTGGACAGCCAGTACTGGGCCAAGCACAGTTGGCAGGGCTGGGGCAAGGAATTCTCACTGAAACACAACAAGGGTTAATGGTAGCCAGCCCTGCTCAGACCCTCAATGACACGCTGGATGACATCATGGCAGCAGTCAGTGGAAGAGCATCTGCAATGTCAAACACTCCTACCCACAGTATCGCTGCTTCTGTTTCCCAACCTCAGACTCCAACTCCAAGTCCCATCATCTCTCCTTCAGCCATGCTACCTATCTACCCTGCCATTGATATTGATGCACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGCTGCTTCTGTTTCCCAAC
60.04
CTGTTTGCTGGCAAATGGCT
59.97
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CGCTGCTTCTGTTTCCCAAC
60.04
CTGGCTGTTTGCTGGCAAAT
59.97
147
PCR template sequence:
CGCTGCTTCTGTTTCCCAACCTCAGACTCCAACTCCAAGTCCCATCATCTCTCCTTCAGCCATGCTACCTATCTACCCTGCCATTGATATTGATGCACAGCTGCTTCTAAACAAAAGTCCAACAGCCATTTGCCAGCAAACAGCCAGGATGTACAGGGTTACATCACCAATCAGTCTCCAGAGAGCATTGTAGAAGAGGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
12
Interacting miRNAs (#binding sites)
mmu-miR-135a-5p(1), mmu-miR-19b-3p(1), mmu-miR-122-5p(1), mmu-miR-10b-5p(1), mmu-miR-10a-5p(1), mmu-miR-153-3p(1), mmu-miR-125a-5p(1), mmu-miR-411-3p(1), mmu-miR-218-5p(1), mmu-miR-5101(1), mmu-miR-670-5p(1), mmu-miR-697(1)
siRNAs for circular RNA silencing
Junction sequence
TATTGATGCACAGCTGCTTCTAAACA
siRNA sets
TGTTTAGAAGCAGCTGTGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKRD17_902_ORF_1
1.1712
0.084209328
0.67791151
486
ORF sequence:
ATGGGTTTTGCACCAATCCAGCCTCTGGCGATGCCTCAAGCTTTGCCTCTGGCAACGGGTCCCTTGCCTCCAGGGTCCATCGCAAATCTTACAGAACTTCAAGGAGTGATAGTTGGACAGCCAGTACTGGGCCAAGCACAGTTGGCAGGGCTGGGGCAAGGAATTCTCACTGAAACACAACAAGGGTTAATGGTAGCCAGCCCTGCTCAGACCCTCAATGACACGCTGGATGACATCATGGCAGCAGTCAGTGGAAGAGCATCTGCAATGTCAAACACTCCTACCCACAGTATCGCTGCTTCTGTTTCCCAACCTCAGACTCCAACTCCAAGTCCCATCATCTCTCCTTCAGCCATGCTACCTATCTACCCTGCCATTGATATTGATGCACAGCTGCTTCTAAACAAAAGTCCAACAGCCATTTGCCAGCAAACAGCCAGGATGTACAGGGTTACATCACCAATCAGTCTCCAGAGAGCATTGTAG
Peptide sequence:
MGFAPIQPLAMPQALPLATGPLPPGSIANLTELQGVIVGQPVLGQAQLAGLGQGILTETQQGLMVASPAQTLNDTLDDIMAAVSGRASAMSNTPTHSIAASVSQPQTPTPSPIISPSAMLPIYPAIDIDAQLLLNKSPTAICQQTARMYRVTSPISLQRAL
IRESfinder result
IRESfinder score
0.510117014
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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