top of page
mmu_circAnkrd17_723
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkrd17_723
mm39_Chr. Position ID:
chr5|90435107|90441155|-
Gene name:
Ankrd17
Transcript:
ENSMUST00000014421.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
11,10,9,8,7
Exon/intron offsets:
0,1335,1989,3699,5953
Genomic length:
6048
Exon/intron sizes in nt:
88,110,192,238,95
Flanking exon/introns:
chr5:90433822-90435107|chr5:90441155-90443443
Splice length:
723
Other database IDs:
circBase: hsa_circ_0069962, circAtlas: hsa-ANKRD17_0146
Human Ortholog IDs:
Mature spliced Sequence:
GACATCTAGAGATGGTGCGATTTCTTTTGGAAGCAGGCGCTGATCAAGAACATAAGACAGATGAAATGCACACTGCTCTAATGGAGGCTTGCATGGATGGCCATGTTGAAGTAGCTAGGTTGCTTCTGGACAGTGGTGCTCAAGTGAACATGCCAGCTGATTCATTTGAGTCACCATTGACTTTGGCTGCATGTGGAGGACATGTGGAACTTGCAGCCTTACTTATTGAAAGAGGAGCTAGCCTGGAAGAGGTCAATGATGAAGGTTATACTCCTTTGATGGAGGCAGCTCGTGAAGGACATGAAGAAATGGTGGCGTTACTTCTTGGCCAAGGAGCAAATATCAATGCACAGACAGAAGAAACTCAAGAAACTGCCTTGACCCTGGCTTGCTGTGGAGGCTTTCTGGAAGTAGCAGACTTTCTGATTAAGGCTGGGGCTGATATAGAACTAGGGTGTTCTACTCCTTTGATGGAAGCTGCTCAAGAAGGTCACTTGGAGTTAGTGAAATACTTACTAGCTGCAGGAGCTAATGTTCATGCAACGACAGCAACAGGAGACACAGCTTTAACATATGCCTGTGAAAATGGCCATACGGATGTAGCAGACGTCTTACTCCAGGCAGGTGCAGATCTGGAACATGAGTCAGAAGGTGGAAGAACTCCTTTAATGAAAGCTGCAAGAGCGGGTCATGTTTGCACAGTCCAGTTCTTAATTAGCAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CAAGAGCGGGTCATGTTTGC
60.11
CCATCCATGCAAGCCTCCAT
60.47
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCAAGAGCGGGTCATGTTTG
60.11
CCATCCATGCAAGCCTCCAT
60.47
146
PCR template sequence:
GGTGCAGATCTGGAACATGAGTCAGAAGGTGGAAGAACTCCTTTAATGAAAGCTGCAAGAGCGGGTCATGTTTGCACAGTCCAGTTCTTAATTAGCAAAGGACATCTAGAGATGGTGCGATTTCTTTTGGAAGCAGGCGCTGATCAAGAACATAAGACAGATGAAATGCACACTGCTCTAATGGAGGCTTGCATGGATGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-221-3p(1), mmu-miR-33-5p(1), mmu-miR-222-3p(1), mmu-miR-22-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTAATTAGCAAAGGACATCTAGAGAT
siRNA sets
ATCTCTAGATGTCCTTTGC,TCTCTAGATGTCCTTTGCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKRD17_723_ORF_1
1.2712
0.090645431
0.999592851
1434
ORF sequence:
ATGGTGCGATTTCTTTTGGAAGCAGGCGCTGATCAAGAACATAAGACAGATGAAATGCACACTGCTCTAATGGAGGCTTGCATGGATGGCCATGTTGAAGTAGCTAGGTTGCTTCTGGACAGTGGTGCTCAAGTGAACATGCCAGCTGATTCATTTGAGTCACCATTGACTTTGGCTGCATGTGGAGGACATGTGGAACTTGCAGCCTTACTTATTGAAAGAGGAGCTAGCCTGGAAGAGGTCAATGATGAAGGTTATACTCCTTTGATGGAGGCAGCTCGTGAAGGACATGAAGAAATGGTGGCGTTACTTCTTGGCCAAGGAGCAAATATCAATGCACAGACAGAAGAAACTCAAGAAACTGCCTTGACCCTGGCTTGCTGTGGAGGCTTTCTGGAAGTAGCAGACTTTCTGATTAAGGCTGGGGCTGATATAGAACTAGGGTGTTCTACTCCTTTGATGGAAGCTGCTCAAGAAGGTCACTTGGAGTTAGTGAAATACTTACTAGCTGCAGGAGCTAATGTTCATGCAACGACAGCAACAGGAGACACAGCTTTAACATATGCCTGTGAAAATGGCCATACGGATGTAGCAGACGTCTTACTCCAGGCAGGTGCAGATCTGGAACATGAGTCAGAAGGTGGAAGAACTCCTTTAATGAAAGCTGCAAGAGCGGGTCATGTTTGCACAGTCCAGTTCTTAATTAGCAAAGGACATCTAGAGATGGTGCGATTTCTTTTGGAAGCAGGCGCTGATCAAGAACATAAGACAGATGAAATGCACACTGCTCTAATGGAGGCTTGCATGGATGGCCATGTTGAAGTAGCTAGGTTGCTTCTGGACAGTGGTGCTCAAGTGAACATGCCAGCTGATTCATTTGAGTCACCATTGACTTTGGCTGCATGTGGAGGACATGTGGAACTTGCAGCCTTACTTATTGAAAGAGGAGCTAGCCTGGAAGAGGTCAATGATGAAGGTTATACTCCTTTGATGGAGGCAGCTCGTGAAGGACATGAAGAAATGGTGGCGTTACTTCTTGGCCAAGGAGCAAATATCAATGCACAGACAGAAGAAACTCAAGAAACTGCCTTGACCCTGGCTTGCTGTGGAGGCTTTCTGGAAGTAGCAGACTTTCTGATTAAGGCTGGGGCTGATATAGAACTAGGGTGTTCTACTCCTTTGATGGAAGCTGCTCAAGAAGGTCACTTGGAGTTAGTGAAATACTTACTAGCTGCAGGAGCTAATGTTCATGCAACGACAGCAACAGGAGACACAGCTTTAACATATGCCTGTGAAAATGGCCATACGGATGTAGCAGACGTCTTACTCCAGGCAGGTGCAGATCTGGAACATGAGTCAGAAGGTGGAAGAACTCCTTTAATGAAAGCTGCAAGAGCGGGTCATGTTTGCACAGTCCAGTTCTTAATTAGCAAA
Peptide sequence:
MVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADSFESPLTLAACGGHVELAALLIERGASLEEVNDEGYTPLMEAAREGHEEMVALLLGQGANINAQTEETQETALTLACCGGFLEVADFLIKAGADIELGCSTPLMEAAQEGHLELVKYLLAAGANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHVCTVQFLISKGHLEMVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADSFESPLTLAACGGHVELAALLIERGASLEEVNDEGYTPLMEAAREGHEEMVALLLGQGANINAQTEETQETALTLACCGGFLEVADFLIKAGADIELGCSTPLMEAAQEGHLELVKYLLAAGANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHVCTVQFLISK
IRESfinder result
IRESfinder score
0.468744633
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page