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mmu_circAnkrd17_723

Basic information of circular RNA
PanCircBase ID:

mmu_circAnkrd17_723

mm39_Chr. Position ID:

chr5|90435107|90441155|-

Gene name:

Ankrd17

Transcript:

ENSMUST00000014421.15

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

5

Exon/intron indexes:

11,10,9,8,7

Exon/intron offsets:

0,1335,1989,3699,5953

Genomic length:

6048

Exon/intron sizes in nt:

88,110,192,238,95

Flanking exon/introns:

chr5:90433822-90435107|chr5:90441155-90443443

Splice length:

723

Other database IDs:

circBase: hsa_circ_0069962, circAtlas: hsa-ANKRD17_0146

Human Ortholog IDs:
Mature spliced Sequence:

GACATCTAGAGATGGTGCGATTTCTTTTGGAAGCAGGCGCTGATCAAGAACATAAGACAGATGAAATGCACACTGCTCTAATGGAGGCTTGCATGGATGGCCATGTTGAAGTAGCTAGGTTGCTTCTGGACAGTGGTGCTCAAGTGAACATGCCAGCTGATTCATTTGAGTCACCATTGACTTTGGCTGCATGTGGAGGACATGTGGAACTTGCAGCCTTACTTATTGAAAGAGGAGCTAGCCTGGAAGAGGTCAATGATGAAGGTTATACTCCTTTGATGGAGGCAGCTCGTGAAGGACATGAAGAAATGGTGGCGTTACTTCTTGGCCAAGGAGCAAATATCAATGCACAGACAGAAGAAACTCAAGAAACTGCCTTGACCCTGGCTTGCTGTGGAGGCTTTCTGGAAGTAGCAGACTTTCTGATTAAGGCTGGGGCTGATATAGAACTAGGGTGTTCTACTCCTTTGATGGAAGCTGCTCAAGAAGGTCACTTGGAGTTAGTGAAATACTTACTAGCTGCAGGAGCTAATGTTCATGCAACGACAGCAACAGGAGACACAGCTTTAACATATGCCTGTGAAAATGGCCATACGGATGTAGCAGACGTCTTACTCCAGGCAGGTGCAGATCTGGAACATGAGTCAGAAGGTGGAAGAACTCCTTTAATGAAAGCTGCAAGAGCGGGTCATGTTTGCACAGTCCAGTTCTTAATTAGCAAAG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

CAAGAGCGGGTCATGTTTGC

60.11

CCATCCATGCAAGCCTCCAT

60.47

145

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

GCAAGAGCGGGTCATGTTTG

60.11

CCATCCATGCAAGCCTCCAT

60.47

146

PCR template sequence:

GGTGCAGATCTGGAACATGAGTCAGAAGGTGGAAGAACTCCTTTAATGAAAGCTGCAAGAGCGGGTCATGTTTGCACAGTCCAGTTCTTAATTAGCAAAGGACATCTAGAGATGGTGCGATTTCTTTTGGAAGCAGGCGCTGATCAAGAACATAAGACAGATGAAATGCACACTGCTCTAATGGAGGCTTGCATGGATGG

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

4

Interacting miRNAs (#binding sites)

mmu-miR-221-3p(1), mmu-miR-33-5p(1), mmu-miR-222-3p(1), mmu-miR-22-3p(1)

siRNAs for circular RNA silencing
Junction sequence

TTAATTAGCAAAGGACATCTAGAGAT

siRNA sets

ATCTCTAGATGTCCTTTGC,TCTCTAGATGTCCTTTGCT

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCANKRD17_723_ORF_1

1.2712

0.090645431

0.999592851

1434

ORF sequence:

ATGGTGCGATTTCTTTTGGAAGCAGGCGCTGATCAAGAACATAAGACAGATGAAATGCACACTGCTCTAATGGAGGCTTGCATGGATGGCCATGTTGAAGTAGCTAGGTTGCTTCTGGACAGTGGTGCTCAAGTGAACATGCCAGCTGATTCATTTGAGTCACCATTGACTTTGGCTGCATGTGGAGGACATGTGGAACTTGCAGCCTTACTTATTGAAAGAGGAGCTAGCCTGGAAGAGGTCAATGATGAAGGTTATACTCCTTTGATGGAGGCAGCTCGTGAAGGACATGAAGAAATGGTGGCGTTACTTCTTGGCCAAGGAGCAAATATCAATGCACAGACAGAAGAAACTCAAGAAACTGCCTTGACCCTGGCTTGCTGTGGAGGCTTTCTGGAAGTAGCAGACTTTCTGATTAAGGCTGGGGCTGATATAGAACTAGGGTGTTCTACTCCTTTGATGGAAGCTGCTCAAGAAGGTCACTTGGAGTTAGTGAAATACTTACTAGCTGCAGGAGCTAATGTTCATGCAACGACAGCAACAGGAGACACAGCTTTAACATATGCCTGTGAAAATGGCCATACGGATGTAGCAGACGTCTTACTCCAGGCAGGTGCAGATCTGGAACATGAGTCAGAAGGTGGAAGAACTCCTTTAATGAAAGCTGCAAGAGCGGGTCATGTTTGCACAGTCCAGTTCTTAATTAGCAAAGGACATCTAGAGATGGTGCGATTTCTTTTGGAAGCAGGCGCTGATCAAGAACATAAGACAGATGAAATGCACACTGCTCTAATGGAGGCTTGCATGGATGGCCATGTTGAAGTAGCTAGGTTGCTTCTGGACAGTGGTGCTCAAGTGAACATGCCAGCTGATTCATTTGAGTCACCATTGACTTTGGCTGCATGTGGAGGACATGTGGAACTTGCAGCCTTACTTATTGAAAGAGGAGCTAGCCTGGAAGAGGTCAATGATGAAGGTTATACTCCTTTGATGGAGGCAGCTCGTGAAGGACATGAAGAAATGGTGGCGTTACTTCTTGGCCAAGGAGCAAATATCAATGCACAGACAGAAGAAACTCAAGAAACTGCCTTGACCCTGGCTTGCTGTGGAGGCTTTCTGGAAGTAGCAGACTTTCTGATTAAGGCTGGGGCTGATATAGAACTAGGGTGTTCTACTCCTTTGATGGAAGCTGCTCAAGAAGGTCACTTGGAGTTAGTGAAATACTTACTAGCTGCAGGAGCTAATGTTCATGCAACGACAGCAACAGGAGACACAGCTTTAACATATGCCTGTGAAAATGGCCATACGGATGTAGCAGACGTCTTACTCCAGGCAGGTGCAGATCTGGAACATGAGTCAGAAGGTGGAAGAACTCCTTTAATGAAAGCTGCAAGAGCGGGTCATGTTTGCACAGTCCAGTTCTTAATTAGCAAA

Peptide sequence:

MVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADSFESPLTLAACGGHVELAALLIERGASLEEVNDEGYTPLMEAAREGHEEMVALLLGQGANINAQTEETQETALTLACCGGFLEVADFLIKAGADIELGCSTPLMEAAQEGHLELVKYLLAAGANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHVCTVQFLISKGHLEMVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADSFESPLTLAACGGHVELAALLIERGASLEEVNDEGYTPLMEAAREGHEEMVALLLGQGANINAQTEETQETALTLACCGGFLEVADFLIKAGADIELGCSTPLMEAAQEGHLELVKYLLAAGANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHVCTVQFLISK

IRESfinder result

IRESfinder score

0.468744633

IRES/non IRES

non-IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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Institute of Life sciences, Bhubaneswar, India

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