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mmu_circAnkmy2_815
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkmy2_815
mm39_Chr. Position ID:
chr12|36215868|36237784|+
Gene name:
Ankmy2
Transcript:
ENSMUST00000041640.5
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
2,3,4,5,6,7
Exon/intron offsets:
0,4579,10710,16478,20856,21780
Genomic length:
21916
Exon/intron sizes in nt:
65,139,99,161,215,136
Flanking exon/introns:
chr12:36207422-36215868|chr12:36237784-36243668
Splice length:
815
Other database IDs:
circAtlas: mmu-Ankmy2_0001
circAtlas: hsa-ANKMY2_0010, CIRCpedia: HSA_CIRCpedia_132404
Human Ortholog IDs:
Mature spliced Sequence:
GTACTGTCCAAGAAGCCGGAAGACTGTTGTCTAGTAAGAATGTTCATGTCAACTGCTTGGATGAGAATGGAATGACTCCTTTGATGCATGCAGCCTATAAAGGGAAACTCGAGATGTGCAAGCTCCTCCTGCGCCATGGAGCTGACGCCAGTTGCCATCAGCATGAGCACGGGTACACAGCCCTCATGTTTGCTGCGCTTTCCGGTAATAAAGACATCACTTGGGTCATGCTGGAAGCAGGCGCAGAGACCGATGTTGTGAACTCGGTGGGAAGAACTGCTGCCCAGATGGCAGCCTTTGTGGGTCAGCACGATTGCGTGGCTATCATCAACAATTTCTTCCCTCGAGAGAGACTGGATTATTACACTAAACCCCAGGGACTGGATAAAGAGCCAAAACTGCCTCCAAAGTTGGCAGGCCCGCTACACAAAATCATCACCACAACGAATCTCCACCCTGTCAAGATCGTGATGCTTGTGAGTGAGAACCCTCTGCTGGCAGACGCAGCTGCTCTCGGTAAATGCTACAGGGTGATGGATTTGATCTGTGAGAAATGCATGAAACAGAGAGACATGAATGAAGTGTTGGCTATGAAAATGCACTACATCAGCTGCATCTTTCAGAAATGCATTACCTTCCTCAAAGAAGGAGAGAATAAGCTGGACACCCTGATCAGAAGCTTGTTGAAAGGCCGAGCGTCTGATGGCTTCCCGGTGTATCAGGAAAAGATCATCAGAGAAAGCATCCGGAAGTTTCCATACTGTGAAGCCACACTCCTACAGCAGCTGGTGCGAAGCATCGCTCCAGTTGAAATT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GAAGCCACACTCCTACAGCA
59.68
GGCTGCATGCATCAAAGGAG
59.9
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGAAGCCACACTCCTACAGC
59.68
GGCTGCATGCATCAAAGGAG
59.9
147
PCR template sequence:
GTATCAGGAAAAGATCATCAGAGAAAGCATCCGGAAGTTTCCATACTGTGAAGCCACACTCCTACAGCAGCTGGTGCGAAGCATCGCTCCAGTTGAAATTGTACTGTCCAAGAAGCCGGAAGACTGTTGTCTAGTAAGAATGTTCATGTCAACTGCTTGGATGAGAATGGAATGACTCCTTTGATGCATGCAGCCTATAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
13
Interacting miRNAs (#binding sites)
mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-122-5p(1), mmu-miR-204-5p(1), mmu-miR-18a-5p(1), mmu-miR-132-3p(1), mmu-miR-10b-5p(1), mmu-miR-10a-5p(1), mmu-miR-212-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-452-3p(1), mmu-miR-574-5p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TCCAGTTGAAATTGTACTGTCCAAGA
siRNA sets
CTTGGACAGTACAATTTCA, TTGGACAGTACAATTTCAA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKMY2_815_ORF_1
1.0978
0.261185582
0.976759834
819
ORF sequence:
ATGACTCCTTTGATGCATGCAGCCTATAAAGGGAAACTCGAGATGTGCAAGCTCCTCCTGCGCCATGGAGCTGACGCCAGTTGCCATCAGCATGAGCACGGGTACACAGCCCTCATGTTTGCTGCGCTTTCCGGTAATAAAGACATCACTTGGGTCATGCTGGAAGCAGGCGCAGAGACCGATGTTGTGAACTCGGTGGGAAGAACTGCTGCCCAGATGGCAGCCTTTGTGGGTCAGCACGATTGCGTGGCTATCATCAACAATTTCTTCCCTCGAGAGAGACTGGATTATTACACTAAACCCCAGGGACTGGATAAAGAGCCAAAACTGCCTCCAAAGTTGGCAGGCCCGCTACACAAAATCATCACCACAACGAATCTCCACCCTGTCAAGATCGTGATGCTTGTGAGTGAGAACCCTCTGCTGGCAGACGCAGCTGCTCTCGGTAAATGCTACAGGGTGATGGATTTGATCTGTGAGAAATGCATGAAACAGAGAGACATGAATGAAGTGTTGGCTATGAAAATGCACTACATCAGCTGCATCTTTCAGAAATGCATTACCTTCCTCAAAGAAGGAGAGAATAAGCTGGACACCCTGATCAGAAGCTTGTTGAAAGGCCGAGCGTCTGATGGCTTCCCGGTGTATCAGGAAAAGATCATCAGAGAAAGCATCCGGAAGTTTCCATACTGTGAAGCCACACTCCTACAGCAGCTGGTGCGAAGCATCGCTCCAGTTGAAATTGTACTGTCCAAGAAGCCGGAAGACTGTTGTCTAGTAAGAATGTTCATGTCAACTGCTTGGATGAGAATGGAATGA
Peptide sequence:
MTPLMHAAYKGKLEMCKLLLRHGADASCHQHEHGYTALMFAALSGNKDITWVMLEAGAETDVVNSVGRTAAQMAAFVGQHDCVAIINNFFPRERLDYYTKPQGLDKEPKLPPKLAGPLHKIITTTNLHPVKIVMLVSENPLLADAAALGKCYRVMDLICEKCMKQRDMNEVLAMKMHYISCIFQKCITFLKEGENKLDTLIRSLLKGRASDGFPVYQEKIIRESIRKFPYCEATLLQQLVRSIAPVEIVLSKKPEDCCLVRMFMSTAWMRME
IRESfinder result
IRESfinder score
0.349280752
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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