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mmu_circAnkle2_746
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkle2_746
mm39_Chr. Position ID:
chr5|110385520|110397366|+
Gene name:
Ankle2
Transcript:
ENSMUST00000197188.5
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
4,5,6,7,8
Exon/intron offsets:
0,292,4274,6849,11676
Genomic length:
11846
Exon/intron sizes in nt:
1,97,18,91,23,67,170
Flanking exon/introns:
chr5:110384345-110385520|chr5:110397366-110398566
Splice length:
746
Other database IDs:
circAtlas: mmu-Ankle2_0018
Human Ortholog IDs:
Mature spliced Sequence:
CAGATGGCTTGTGCCTGGCTGAATCAGAAACAGTAAACAAAGAACGAGCAAACAGTTACAAAAACCCCCGTACCCAGGACCTCACGGCCAAGCTGCGGAAAGCTGTCGAAAACGGGGAGGAACACACCTTTTCTGATCTTATCTGGAGTAATCCTCGATATCTAATTGGTTCTGGGGACAACCCAACCATTGTACAAGAAGGATGTAGGTACAATGTCATGCATGTTGCTGCCAAAGAGAACCAGGCTTCCATGTGCCAGCTGACATTAGAGACTCTGGAGAACCCTGAGTTTATGCGTCTGATGTACCCAGATGACAACATGGACATGCTACAGAAGCGCATCCTCTACGTTGTTGACCTGTATCTTAATACTCCTGACAAAGTGGGCTTTGATACACCACTGCATTTTGCTTGTAAATTTGGAAATGTGGATGTAGTCAATGTGCTTTCTTCACACCCTTTGATTGTGAAAAACCGAAAGAATAAATATGGTAAAACACCTGAAGAAGTAATTTGTGAAAGAAGCCAAAACAAATCTCCAGCACTGAAAGAAAGGATTAGAGAATACTTAATGGGTCACTACTATGTGCCACTCCTGAGAGCAGAAGACACTTCTCCTGTCATTGGGGAGCTGTGGTCCTCAGACCAGAAAGCTGAAGCCTCAAATACTGCCCACTGTAGAAGCAGCCCCAGAGATCCTGTGATGACACTGAGAGCTTTCGTGGGACCTCTGAGTCCATCCAAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTGTAGAAGCAGCCCCAGAG
59.82
CTGGGTACGGGGGTTTTTGT
60.18
147
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGTAGAAGCAGCCCCAGAGA
60.25
CTGGGTACGGGGGTTTTTGT
60.18
146
PCR template sequence:
CCAGAAAGCTGAAGCCTCAAATACTGCCCACTGTAGAAGCAGCCCCAGAGATCCTGTGATGACACTGAGAGCTTTCGTGGGACCTCTGAGTCCATCCAAACAGATGGCTTGTGCCTGGCTGAATCAGAAACAGTAAACAAAGAACGAGCAAACAGTTACAAAAACCCCCGTACCCAGGACCTCACGGCCAAGCTGCGGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-326-3p(1), mmu-miR-139-5p(1), mmu-miR-383-5p(1), mmu-miR-5101(1), mmu-miR-697(1), mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
GAGTCCATCCAAACAGATGGCTTGTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKLE2_746_ORF_1
0.9409
0.154933607
0.764086238
564
ORF sequence:
ATGCATGTTGCTGCCAAAGAGAACCAGGCTTCCATGTGCCAGCTGACATTAGAGACTCTGGAGAACCCTGAGTTTATGCGTCTGATGTACCCAGATGACAACATGGACATGCTACAGAAGCGCATCCTCTACGTTGTTGACCTGTATCTTAATACTCCTGACAAAGTGGGCTTTGATACACCACTGCATTTTGCTTGTAAATTTGGAAATGTGGATGTAGTCAATGTGCTTTCTTCACACCCTTTGATTGTGAAAAACCGAAAGAATAAATATGGTAAAACACCTGAAGAAGTAATTTGTGAAAGAAGCCAAAACAAATCTCCAGCACTGAAAGAAAGGATTAGAGAATACTTAATGGGTCACTACTATGTGCCACTCCTGAGAGCAGAAGACACTTCTCCTGTCATTGGGGAGCTGTGGTCCTCAGACCAGAAAGCTGAAGCCTCAAATACTGCCCACTGTAGAAGCAGCCCCAGAGATCCTGTGATGACACTGAGAGCTTTCGTGGGACCTCTGAGTCCATCCAAACAGATGGCTTGTGCCTGGCTGAATCAGAAACAGTAA
Peptide sequence:
MHVAAKENQASMCQLTLETLENPEFMRLMYPDDNMDMLQKRILYVVDLYLNTPDKVGFDTPLHFACKFGNVDVVNVLSSHPLIVKNRKNKYGKTPEEVICERSQNKSPALKERIREYLMGHYYVPLLRAEDTSPVIGELWSSDQKAEASNTAHCRSSPRDPVMTLRAFVGPLSPSKQMACAWLNQKQ
IRESfinder result
IRESfinder score
0.500150232
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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