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mmu_circAnkle2_1257
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkle2_1257
mm39_Chr. Position ID:
chr5|110382212|110392436|+
Gene name:
Ankle2
Transcript:
ENSMUST00000197188.5
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
2,3,4,5,6,7
Exon/intron offsets:
0,1926,3308,3600,7582,10157
Genomic length:
10224
Exon/intron sizes in nt:
474,207,197,189,123,67
Flanking exon/introns:
chr5:110379289-110382212|chr5:110392436-110397196
Splice length:
1257
Other database IDs:
CIRCpedia: MMU_CIRCpedia_2820, circAtlas: mmu-Ankle2_0009
circBase: hsa_circ_0097924, circAtlas: hsa-ANKLE2_0004, CIRCpedia: HSA_CIRCpedia_7768
Human Ortholog IDs:
Mature spliced Sequence:
GTGAAGTGACAATGGATGCCATGATGGCTCGACTGAAACTCTTGAATCCAGATGACCTTAGAAAAGAAGTTATGAAAGCTGGACTTAAATGTGGACCCATTACATCAACAACAAGATTTATTTTTGAGAAGAAATTAGCTCAGGCCTTACTGGAACAAGGTGGATTGCTGACCTCTTCCCTTCCCAAGCCCAGCGCGGTTACTGCCATGGCATTTATCCAGGGCACCTCAAGGACTCCTCCATCTGTGGACGGGAAACAAACTCAGCAGGCCTGTTTTTCTGAAGACAGAGATTTTGGTTACAGTGTGGGCTTGAACCCTCCAGAAGAGGAAGCGGTAGCATCCAGTGTCCACCCAGTACCCTTCAGTGCCTCTACCAGGAATGACAACCACAAGGCTGGAGTGACAGCTCCTAAGGAGCCACTTGTGTACTATGGAGTGTGTCCAGTATATGAGGATGGCCCTGTGAGACATGAGAGGATCCATGTTTACGAAGATAAAAAGGAAGCTTTACAAGCTGCCAAGTTGATCAAAGGGTCCCGGTTTAAAGCTTTTCGAACAAGAGAAGATGCTGAGAAATTTGCTAGAGGGATATGTGATTATTTACCTTCTCCCAACAAAACTACGCCCTTACTGTCTCCTGTGAAGGCAGTGCCCCTCGGTGGCAGTGATGGGCTGAAAGCAGATGGCTTGTGCCTGGCTGAATCAGAAACAGTAAACAAAGAACGAGCAAACAGTTACAAAAACCCCCGTACCCAGGACCTCACGGCCAAGCTGCGGAAAGCTGTCGAAAACGGGGAGGAACACACCTTTTCTGATCTTATCTGGAGTAATCCTCGATATCTAATTGGTTCTGGGGACAACCCAACCATTGTACAAGAAGGATGTAGGTACAATGTCATGCATGTTGCTGCCAAAGAGAACCAGGCTTCCATGTGCCAGCTGACATTAGAGACTCTGGAGAACCCTGAGTTTATGCGTCTGATGTACCCAGATGACAACATGGACATGCTACAGAAGCGCATCCTCTACGTTGTTGACCTGTATCTTAATACTCCTGACAAAGTGGGCTTTGATACACCACTGCATTTTGCTTGTAAATTTGGAAATGTGGATGTAGTCAATGTGCTTTCTTCACACCCTTTGATTGTGAAAAACCGAAAGAATAAATATGGTAAAACACCTGAAGAAGTAATTTGTGAAAGAAGCCAAAACAAATCTCCAGCACTGAAAGAAAGGATTAGAGAATACTTAATGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCCAAAACAAATCTCCAGCACT
59.96
GGGTCCACATTTAAGTCCAGC
58.91
149
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGCCAAAACAAATCTCCAGCAC
59.96
GGGTCCACATTTAAGTCCAGC
58.91
150
PCR template sequence:
CGAAAGAATAAATATGGTAAAACACCTGAAGAAGTAATTTGTGAAAGAAGCCAAAACAAATCTCCAGCACTGAAAGAAAGGATTAGAGAATACTTAATGGGTGAAGTGACAATGGATGCCATGATGGCTCGACTGAAACTCTTGAATCCAGATGACCTTAGAAAAGAAGTTATGAAAGCTGGACTTAAATGTGGACCCAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-30c-5p(1), mmu-miR-30b-5p(1), mmu-miR-370-3p(1), mmu-miR-324-3p(1), mmu-miR-383-5p(1), mmu-miR-5101(1), mmu-miR-697(1)
siRNAs for circular RNA silencing
Junction sequence
GAATACTTAATGGGTGAAGTGACAAT
siRNA sets
ATTGTCACTTCACCCATTA, CTTCACCCATTAAGTATTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKLE2_1257_ORF_1
1.056
0.171449636
0.999999799
2502
ORF sequence:
ATGGATGCCATGATGGCTCGACTGAAACTCTTGAATCCAGATGACCTTAGAAAAGAAGTTATGAAAGCTGGACTTAAATGTGGACCCATTACATCAACAACAAGATTTATTTTTGAGAAGAAATTAGCTCAGGCCTTACTGGAACAAGGTGGATTGCTGACCTCTTCCCTTCCCAAGCCCAGCGCGGTTACTGCCATGGCATTTATCCAGGGCACCTCAAGGACTCCTCCATCTGTGGACGGGAAACAAACTCAGCAGGCCTGTTTTTCTGAAGACAGAGATTTTGGTTACAGTGTGGGCTTGAACCCTCCAGAAGAGGAAGCGGTAGCATCCAGTGTCCACCCAGTACCCTTCAGTGCCTCTACCAGGAATGACAACCACAAGGCTGGAGTGACAGCTCCTAAGGAGCCACTTGTGTACTATGGAGTGTGTCCAGTATATGAGGATGGCCCTGTGAGACATGAGAGGATCCATGTTTACGAAGATAAAAAGGAAGCTTTACAAGCTGCCAAGTTGATCAAAGGGTCCCGGTTTAAAGCTTTTCGAACAAGAGAAGATGCTGAGAAATTTGCTAGAGGGATATGTGATTATTTACCTTCTCCCAACAAAACTACGCCCTTACTGTCTCCTGTGAAGGCAGTGCCCCTCGGTGGCAGTGATGGGCTGAAAGCAGATGGCTTGTGCCTGGCTGAATCAGAAACAGTAAACAAAGAACGAGCAAACAGTTACAAAAACCCCCGTACCCAGGACCTCACGGCCAAGCTGCGGAAAGCTGTCGAAAACGGGGAGGAACACACCTTTTCTGATCTTATCTGGAGTAATCCTCGATATCTAATTGGTTCTGGGGACAACCCAACCATTGTACAAGAAGGATGTAGGTACAATGTCATGCATGTTGCTGCCAAAGAGAACCAGGCTTCCATGTGCCAGCTGACATTAGAGACTCTGGAGAACCCTGAGTTTATGCGTCTGATGTACCCAGATGACAACATGGACATGCTACAGAAGCGCATCCTCTACGTTGTTGACCTGTATCTTAATACTCCTGACAAAGTGGGCTTTGATACACCACTGCATTTTGCTTGTAAATTTGGAAATGTGGATGTAGTCAATGTGCTTTCTTCACACCCTTTGATTGTGAAAAACCGAAAGAATAAATATGGTAAAACACCTGAAGAAGTAATTTGTGAAAGAAGCCAAAACAAATCTCCAGCACTGAAAGAAAGGATTAGAGAATACTTAATGGGTGAAGTGACAATGGATGCCATGATGGCTCGACTGAAACTCTTGAATCCAGATGACCTTAGAAAAGAAGTTATGAAAGCTGGACTTAAATGTGGACCCATTACATCAACAACAAGATTTATTTTTGAGAAGAAATTAGCTCAGGCCTTACTGGAACAAGGTGGATTGCTGACCTCTTCCCTTCCCAAGCCCAGCGCGGTTACTGCCATGGCATTTATCCAGGGCACCTCAAGGACTCCTCCATCTGTGGACGGGAAACAAACTCAGCAGGCCTGTTTTTCTGAAGACAGAGATTTTGGTTACAGTGTGGGCTTGAACCCTCCAGAAGAGGAAGCGGTAGCATCCAGTGTCCACCCAGTACCCTTCAGTGCCTCTACCAGGAATGACAACCACAAGGCTGGAGTGACAGCTCCTAAGGAGCCACTTGTGTACTATGGAGTGTGTCCAGTATATGAGGATGGCCCTGTGAGACATGAGAGGATCCATGTTTACGAAGATAAAAAGGAAGCTTTACAAGCTGCCAAGTTGATCAAAGGGTCCCGGTTTAAAGCTTTTCGAACAAGAGAAGATGCTGAGAAATTTGCTAGAGGGATATGTGATTATTTACCTTCTCCCAACAAAACTACGCCCTTACTGTCTCCTGTGAAGGCAGTGCCCCTCGGTGGCAGTGATGGGCTGAAAGCAGATGGCTTGTGCCTGGCTGAATCAGAAACAGTAAACAAAGAACGAGCAAACAGTTACAAAAACCCCCGTACCCAGGACCTCACGGCCAAGCTGCGGAAAGCTGTCGAAAACGGGGAGGAACACACCTTTTCTGATCTTATCTGGAGTAATCCTCGATATCTAATTGGTTCTGGGGACAACCCAACCATTGTACAAGAAGGATGTAGGTACAATGTCATGCATGTTGCTGCCAAAGAGAACCAGGCTTCCATGTGCCAGCTGACATTAGAGACTCTGGAGAACCCTGAGTTTATGCGTCTGATGTACCCAGATGACAACATGGACATGCTACAGAAGCGCATCCTCTACGTTGTTGACCTGTATCTTAATACTCCTGACAAAGTGGGCTTTGATACACCACTGCATTTTGCTTGTAAATTTGGAAATGTGGATGTAGTCAATGTGCTTTCTTCACACCCTTTGATTGTGAAAAACCGAAAGAATAAATATGGTAAAACACCTGAAGAAGTAATTTGTGAAAGAAGCCAAAACAAATCTCCAGCACTGAAAGAAAGGATTAGAGAATACTTAATG
Peptide sequence:
MDAMMARLKLLNPDDLRKEVMKAGLKCGPITSTTRFIFEKKLAQALLEQGGLLTSSLPKPSAVTAMAFIQGTSRTPPSVDGKQTQQACFSEDRDFGYSVGLNPPEEEAVASSVHPVPFSASTRNDNHKAGVTAPKEPLVYYGVCPVYEDGPVRHERIHVYEDKKEALQAAKLIKGSRFKAFRTREDAEKFARGICDYLPSPNKTTPLLSPVKAVPLGGSDGLKADGLCLAESETVNKERANSYKNPRTQDLTAKLRKAVENGEEHTFSDLIWSNPRYLIGSGDNPTIVQEGCRYNVMHVAAKENQASMCQLTLETLENPEFMRLMYPDDNMDMLQKRILYVVDLYLNTPDKVGFDTPLHFACKFGNVDVVNVLSSHPLIVKNRKNKYGKTPEEVICERSQNKSPALKERIREYLMGEVTMDAMMARLKLLNPDDLRKEVMKAGLKCGPITSTTRFIFEKKLAQALLEQGGLLTSSLPKPSAVTAMAFIQGTSRTPPSVDGKQTQQACFSEDRDFGYSVGLNPPEEEAVASSVHPVPFSASTRNDNHKAGVTAPKEPLVYYGVCPVYEDGPVRHERIHVYEDKKEALQAAKLIKGSRFKAFRTREDAEKFARGICDYLPSPNKTTPLLSPVKAVPLGGSDGLKADGLCLAESETVNKERANSYKNPRTQDLTAKLRKAVENGEEHTFSDLIWSNPRYLIGSGDNPTIVQEGCRYNVMHVAAKENQASMCQLTLETLENPEFMRLMYPDDNMDMLQKRILYVVDLYLNTPDKVGFDTPLHFACKFGNVDVVNVLSSHPLIVKNRKNKYGKTPEEVICERSQNKSPALKERIREYLM
IRESfinder result
IRESfinder score
0.488147511
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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