top of page
mmu_circAnkib1_602
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkib1_602
mm39_Chr. Position ID:
chr5|3797020|3819729|-
Gene name:
Ankib1
Transcript:
ENSMUST00000043551.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
5,4,3
Exon/intron offsets:
0,8573,22408
Genomic length:
22709
Exon/intron sizes in nt:
11,81,83,301
Flanking exon/introns:
chr5:3784184-3797020|chr5:3819729-3822516
Splice length:
602
Other database IDs:
CIRCpedia: MMU_CIRCpedia_18583, circAtlas: mmu-Ankib1_0001
circBase: hsa_circ_0081014, circAtlas: hsa-ANKIB1_0003, CIRCpedia: HSA_CIRCpedia_59281
Human Ortholog IDs:
Mature spliced Sequence:
GACTTTTCTTTTTGGTAGAGATGGAAACCCAAATAAACGGAATGTGCACAATGAAACATCTATGCATTTGTTGTGTATGGGACCTCAAATCATGATATCTGAAGGAACCCTTCATCCTCGCTTAGCACGGCCTGTGGAAGATGATTTCAGAAGGGCAGATTGTCTGCAGATGATCTTACAGTGGAAAGGAGCAAAACTTGACCAAGGCGAATATGAGAGAGCGGCTATTGATGCCGTTGATAACAAAAAGAACACACCCCTTCACTATGCTGCAGCCTCGGGGATGAAAGCCTGTGTAGAGCTCTTAGTAAAACATGGAGGAGACTTGTTTGCTGAAAATGAAAATAGAGATACTCCTTGTGATTGTGCCGAAAAGCAGCAGCACAAAGACCTGGCCCTCAGTCTGGAGTCTCAGATGGTGTTCTCTCGGGACCCGGAGGCCGAAGAAATAGAAGCGGAGTATGCTGCCTTAGACAAGCGAGAGCCATATGAAGGACTAAGGCCCCAGGATCTTCGTAGGTTAAAAGATATGCTTATTGTGGAGACTGCAGACATGCTCCAGGCCCCTCTGTTTACTGCTGAAGCACTGCTTCGAGCTCACG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCCCAGGATCTTCGTAGGTT
58.5
TGTTTCATTGTGCACATTCCGT
59.64
158
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCCCAGGATCTTCGTAGGTT
58.5
TGCACATTCCGTTTATTTGGGT
59.11
148
PCR template sequence:
CCCCAGGATCTTCGTAGGTTAAAAGATATGCTTATTGTGGAGACTGCAGACATGCTCCAGGCCCCTCTGTTTACTGCTGAAGCACTGCTTCGAGCTCACGGACTTTTCTTTTTGGTAGAGATGGAAACCCAAATAAACGGAATGTGCACAATGAAACATCTATGCATTTGTTGTGTATGGGACCTCAAATCATGATATCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-miR-103-3p(1), mmu-miR-30e-5p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-30a-5p(1), mmu-miR-30d-5p(1), mmu-miR-433-3p(1), mmu-miR-107-3p(1), mmu-miR-3065-5p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTTCGAGCTCACGGACTTTTCTTTTT
siRNA sets
AAAAGAAAAGTCCGTGAGC, AAAGAAAAGTCCGTGAGCT, AAGAAAAGTCCGTGAGCTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKIB1_602_ORF_1
1.0418
0.096074083
0.838690727
636
ORF sequence:
ATGCATTTGTTGTGTATGGGACCTCAAATCATGATATCTGAAGGAACCCTTCATCCTCGCTTAGCACGGCCTGTGGAAGATGATTTCAGAAGGGCAGATTGTCTGCAGATGATCTTACAGTGGAAAGGAGCAAAACTTGACCAAGGCGAATATGAGAGAGCGGCTATTGATGCCGTTGATAACAAAAAGAACACACCCCTTCACTATGCTGCAGCCTCGGGGATGAAAGCCTGTGTAGAGCTCTTAGTAAAACATGGAGGAGACTTGTTTGCTGAAAATGAAAATAGAGATACTCCTTGTGATTGTGCCGAAAAGCAGCAGCACAAAGACCTGGCCCTCAGTCTGGAGTCTCAGATGGTGTTCTCTCGGGACCCGGAGGCCGAAGAAATAGAAGCGGAGTATGCTGCCTTAGACAAGCGAGAGCCATATGAAGGACTAAGGCCCCAGGATCTTCGTAGGTTAAAAGATATGCTTATTGTGGAGACTGCAGACATGCTCCAGGCCCCTCTGTTTACTGCTGAAGCACTGCTTCGAGCTCACGGACTTTTCTTTTTGGTAGAGATGGAAACCCAAATAAACGGAATGTGCACAATGAAACATCTATGCATTTGTTGTGTATGGGACCTCAAATCATGA
Peptide sequence:
MHLLCMGPQIMISEGTLHPRLARPVEDDFRRADCLQMILQWKGAKLDQGEYERAAIDAVDNKKNTPLHYAAASGMKACVELLVKHGGDLFAENENRDTPCDCAEKQQHKDLALSLESQMVFSRDPEAEEIEAEYAALDKREPYEGLRPQDLRRLKDMLIVETADMLQAPLFTAEALLRAHGLFFLVEMETQINGMCTMKHLCICCVWDLKS
IRESfinder result
IRESfinder score
0.557390636
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page