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mmu_circAnkib1_1483
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkib1_1483
mm39_Chr. Position ID:
chr5|3777488|3822787|-
Gene name:
Ankib1
Transcript:
ENSMUST00000043551.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
9,8,7,6,5,4,3,2
Exon/intron offsets:
0,2146,5051,6487,19532,28105,41940,45028
Genomic length:
45299
Exon/intron sizes in nt:
167,145,89,209,118,183,301,271
Flanking exon/introns:
chr5:3772634-3777488|chr5:3822787-3852596
Splice length:
1483
Other database IDs:
CIRCpedia: MMU_CIRCpedia_18502, circAtlas: mmu-Ankib1_0008
circBase: hsa_circ_0002744, circAtlas: hsa-ANKIB1_0008, CIRCpedia: HSA_CIRCpedia_59278
Human Ortholog IDs:
Mature spliced Sequence:
AATGTGAAACATGTTGTAGAAGTACTCAAGAAGTGGCTGAAGGAAGAAAGAACGTGCCACTGCCTATCAGAAAATAACAAAACATGGGAAATACAACCACCAAATTCCGCAAAGCACTCATCAATGGTGATGAAAATTTGGCCTGCCAAATATATGAAAATAATCCTCAGCTAAAAGAATCCCTTGATCCCAATATTTCTTATGGAGAACCCTATCAGCACAACACACCGTTACACTATGCTGCTAGACATGGAATGAATAGAATATTAGGGACTTTTCTTTTTGGTAGAGATGGAAACCCAAATAAACGGAATGTGCACAATGAAACATCTATGCATTTGTTGTGTATGGGACCTCAAATCATGATATCTGAAGGAACCCTTCATCCTCGCTTAGCACGGCCTGTGGAAGATGATTTCAGAAGGGCAGATTGTCTGCAGATGATCTTACAGTGGAAAGGAGCAAAACTTGACCAAGGCGAATATGAGAGAGCGGCTATTGATGCCGTTGATAACAAAAAGAACACACCCCTTCACTATGCTGCAGCCTCGGGGATGAAAGCCTGTGTAGAGCTCTTAGTAAAACATGGAGGAGACTTGTTTGCTGAAAATGAAAATAGAGATACTCCTTGTGATTGTGCCGAAAAGCAGCAGCACAAAGACCTGGCCCTCAGTCTGGAGTCTCAGATGGTGTTCTCTCGGGACCCGGAGGCCGAAGAAATAGAAGCGGAGTATGCTGCCTTAGACAAGCGAGAGCCATATGAAGGACTAAGGCCCCAGGATCTTCGTAGGTTAAAAGATATGCTTATTGTGGAGACTGCAGACATGCTCCAGGCCCCTCTGTTTACTGCTGAAGCACTGCTTCGAGCTCACGATTGGGACAGGGAGAAGTTGCTTGAAGCTTGGATGTCCAACCCAGAGAACTGCTGCCAGCGGTCAGGGGTGCAGATGCCAACCCCACCACCCAGTGGGTACAATGCCTGGGACACGCTGCCTTCCCCGAGAACTCCAAGGACTACAAGATCCTCTGTCACCTCCCCAGATGAAATCAGTCTGTCTCCTGGGGATTTAGATACCAGTTTGTGTGACATTTGTATGTGCAGTATTTCTGTGTTTGAAGATCCAGTGGATATGCCCTGTGGACATGATTTTTGTAGAGGCTGTTGGGAGGCGTTTTTAAATCTGAAAATTCAAGAAGGTGAAGCCCATAACATTTTCTGCCCTGCATATGAATGCTTTCAACTCGTGCCTGTAGATGTCATAGAAAGTGTAGTTTCTAAGGAGATGGACAAACGATACCTACAGTTTGATATTAAGGCCTTTGTTGAAAATAATCCTGCCATTAAATGGTGTCCTACCGCAGGCTGTGAACGAGCAGTCAGACTGACAAAGCAGGGGTCAAATCCATCTGGGTCTGACACACTCAGCTTCCCATTGCTAAGAGCCCCTGCTGTGGACTGCGGCAAAGGACACCTCTTCTGCTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTGGGTCTGACACACTCAGC
60.32
TAGGCAGTGGCACGTTCTTT
59.89
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTGGGTCTGACACACTCAGC
60.32
GATAGGCAGTGGCACGTTCT
60.11
144
PCR template sequence:
TGACAAAGCAGGGGTCAAATCCATCTGGGTCTGACACACTCAGCTTCCCATTGCTAAGAGCCCCTGCTGTGGACTGCGGCAAAGGACACCTCTTCTGCTGAATGTGAAACATGTTGTAGAAGTACTCAAGAAGTGGCTGAAGGAAGAAAGAACGTGCCACTGCCTATCAGAAAATAACAAAACATGGGAAATACAACCAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
26
Interacting miRNAs (#binding sites)
mmu-miR-103-3p(2), mmu-miR-107-3p(2), mmu-miR-680(2), mmu-miR-335-3p(2), mmu-miR-3065-5p(2), mmu-miR-15a-5p(1), mmu-miR-429-3p(1), mmu-miR-200b-3p(1), mmu-miR-150-5p(1), mmu-miR-30e-5p(1), mmu-miR-200c-3p(1), mmu-miR-15b-5p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-30a-5p(1), mmu-miR-298-5p(1), mmu-miR-196a-5p(1), mmu-miR-339-5p(1), mmu-miR-30d-5p(1), mmu-miR-433-3p(1), mmu-miR-29b-1-5p(1), mmu-miR-541-5p(1), mmu-miR-377-3p(1), mmu-miR-207(1), mmu-miR-7a-1-3p(1), mmu-miR-542-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ACCTCTTCTGCTGAATGTGAAACATG
siRNA sets
TTCACATTCAGCAGAAGAG, TCACATTCAGCAGAAGAGG, TTTCACATTCAGCAGAAGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKIB1_1483_ORF_1
0.9228
0.093843746
0.998990627
1401
ORF sequence:
ATGGGAAATACAACCACCAAATTCCGCAAAGCACTCATCAATGGTGATGAAAATTTGGCCTGCCAAATATATGAAAATAATCCTCAGCTAAAAGAATCCCTTGATCCCAATATTTCTTATGGAGAACCCTATCAGCACAACACACCGTTACACTATGCTGCTAGACATGGAATGAATAGAATATTAGGGACTTTTCTTTTTGGTAGAGATGGAAACCCAAATAAACGGAATGTGCACAATGAAACATCTATGCATTTGTTGTGTATGGGACCTCAAATCATGATATCTGAAGGAACCCTTCATCCTCGCTTAGCACGGCCTGTGGAAGATGATTTCAGAAGGGCAGATTGTCTGCAGATGATCTTACAGTGGAAAGGAGCAAAACTTGACCAAGGCGAATATGAGAGAGCGGCTATTGATGCCGTTGATAACAAAAAGAACACACCCCTTCACTATGCTGCAGCCTCGGGGATGAAAGCCTGTGTAGAGCTCTTAGTAAAACATGGAGGAGACTTGTTTGCTGAAAATGAAAATAGAGATACTCCTTGTGATTGTGCCGAAAAGCAGCAGCACAAAGACCTGGCCCTCAGTCTGGAGTCTCAGATGGTGTTCTCTCGGGACCCGGAGGCCGAAGAAATAGAAGCGGAGTATGCTGCCTTAGACAAGCGAGAGCCATATGAAGGACTAAGGCCCCAGGATCTTCGTAGGTTAAAAGATATGCTTATTGTGGAGACTGCAGACATGCTCCAGGCCCCTCTGTTTACTGCTGAAGCACTGCTTCGAGCTCACGATTGGGACAGGGAGAAGTTGCTTGAAGCTTGGATGTCCAACCCAGAGAACTGCTGCCAGCGGTCAGGGGTGCAGATGCCAACCCCACCACCCAGTGGGTACAATGCCTGGGACACGCTGCCTTCCCCGAGAACTCCAAGGACTACAAGATCCTCTGTCACCTCCCCAGATGAAATCAGTCTGTCTCCTGGGGATTTAGATACCAGTTTGTGTGACATTTGTATGTGCAGTATTTCTGTGTTTGAAGATCCAGTGGATATGCCCTGTGGACATGATTTTTGTAGAGGCTGTTGGGAGGCGTTTTTAAATCTGAAAATTCAAGAAGGTGAAGCCCATAACATTTTCTGCCCTGCATATGAATGCTTTCAACTCGTGCCTGTAGATGTCATAGAAAGTGTAGTTTCTAAGGAGATGGACAAACGATACCTACAGTTTGATATTAAGGCCTTTGTTGAAAATAATCCTGCCATTAAATGGTGTCCTACCGCAGGCTGTGAACGAGCAGTCAGACTGACAAAGCAGGGGTCAAATCCATCTGGGTCTGACACACTCAGCTTCCCATTGCTAAGAGCCCCTGCTGTGGACTGCGGCAAAGGACACCTCTTCTGCTGA
Peptide sequence:
MGNTTTKFRKALINGDENLACQIYENNPQLKESLDPNISYGEPYQHNTPLHYAARHGMNRILGTFLFGRDGNPNKRNVHNETSMHLLCMGPQIMISEGTLHPRLARPVEDDFRRADCLQMILQWKGAKLDQGEYERAAIDAVDNKKNTPLHYAAASGMKACVELLVKHGGDLFAENENRDTPCDCAEKQQHKDLALSLESQMVFSRDPEAEEIEAEYAALDKREPYEGLRPQDLRRLKDMLIVETADMLQAPLFTAEALLRAHDWDREKLLEAWMSNPENCCQRSGVQMPTPPPSGYNAWDTLPSPRTPRTTRSSVTSPDEISLSPGDLDTSLCDICMCSISVFEDPVDMPCGHDFCRGCWEAFLNLKIQEGEAHNIFCPAYECFQLVPVDVIESVVSKEMDKRYLQFDIKAFVENNPAIKWCPTAGCERAVRLTKQGSNPSGSDTLSFPLLRAPAVDCGKGHLFC
IRESfinder result
IRESfinder score
0.542295834
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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