top of page
mmu_circAnkib1_131
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkib1_131
mm39_Chr. Position ID:
chr5|3763107|3763238|-
Gene name:
Ankib1
Transcript:
ENSMUST00000043551.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
11
Exon/intron offsets:
0
Genomic length:
131
Exon/intron sizes in nt:
131
Flanking exon/introns:
chr5:3756323-3763107|chr5:3763238-3772545
Splice length:
131
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
TCGTTGGAGTCAGCGAAGCCTATGAAGATGCTGCCAATTGTCTGTGGCTGTTAACTAACTCCAAGCCTTGTGCGAACTGTAAGTCTCCAATACAGAAGAACGAAGGCTGTAATCACATGCAGTGTGCCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTGTAAGTCTCCAATACAGAAGAACG
59.47
CTTGGAGTTAGTTAACAGCCACA
58.61
120
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTGTAAGTCTCCAATACAGAAGAACG
59.47
CTTGGAGTTAGTTAACAGCCACAG
59.55
120
PCR template sequence:
CTTGTGCGAACTGTAAGTCTCCAATACAGAAGAACGAAGGCTGTAATCACATGCAGTGTGCCAAGTCGTTGGAGTCAGCGAAGCCTATGAAGATGCTGCCAATTGTCTGTGGCTGTTAACTAACTCCAAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-103-3p(1), mmu-miR-107-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GCAGTGTGCCAAGTCGTTGGAGTCAG
siRNA sets
CTGACTCCAACGACTTGGC, ACTCCAACGACTTGGCACA, CAACGACTTGGCACACTGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.409158395
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page