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mmu_circAnkhd1_1332
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkhd1_1332
mm39_Chr. Position ID:
chr18|36733818|36758320|+
Gene name:
Ankhd1
Transcript:
ENSMUST00000006205.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
10,11,12,13,14,15
Exon/intron offsets:
0,11034,12327,13067,13949,23743
Genomic length:
24502
Exon/intron sizes in nt:
11,08,81,28,14,41,03,700
Flanking exon/introns:
chr18:36728046-36733818|chr18:36758320-36765119
Splice length:
1332
Other database IDs:
circAtlas: mmu-Ankhd1_0058
Human Ortholog IDs:
Mature spliced Sequence:
GTGCTAATGTGCATGCTACCACAGCTACAGGAGACACAGCTCTAACCTATGCTTGTGAAAATGGACATACAGATGTTGCAGATGTTCTACTTCAAGCAGGGGCCCATTTAGAACATGAATCTGAAGGTGGAAGAACACCTTTGATGAAAGCTGCAAGAGCGGGTCATTTGTGCACTGTTCAGTTTCTTATTAGCAAAGGTGCCAATGTGAATAGGGCTACAGCCAATAATGATCACACAGTAGTGTCACTGGCATGTGCAGGAGGCCATTTGGCAGTGGTTGAACTGCTCTTGGCTCATGGAGCTGACCCTACTCATCGACTCAAGGATGGATCAACAATGCTTATTGAAGCTGCAAAAGGTGGCCATACTAATGTTGTTTCTTATCTGTTGGATTATCCAAATAATGTTCTGTCAGTTCCCACCACAGATGTATCTCAACTTACCTCTCCGTCACAAGATGAGTCTCAGGTTCCACGAGTACCCATACACACACTTGCCATGGTTGTGCCTCCCCAGGAACCTGACAGAACTTCCCAGGAGACATCTACTGCCCTTTTAGGAGTACAAAAAGGTGCATCCAAGCAGAAGTCCAGTTCTCTGCAGGTAGCAGATCAGGACCTACTGCCACCTTTTCACCCATACCAGCCTTTGGAGTGCATAGTAGAAGAGACTGAAGGCAAGCTGAATGAACTGGGGCAAAGAATTAGTGCTATTGAAAAAGCACAGCTTAAGTCATTGGAGTTAATTCAAGGTGAGCCTCTAAACAAGGATAAGATAGAAGAACTTAAAAAGAACAGAGAAGAGCAAGTCCAGAAGAAGAAGAAAATACTGAAAGAACTACAGAAGGTGGAAAGGCAGTTACAGATGAAAACACAGCAGCAATTTACCAAAGAATACTTGGAAACAAAAGGTCAGAGAGACACAGAGTCTCCACACCAGCAATGTTCTAATAGAGGAGTCTTCATGGCAGGGGAAGAAGATGGCAGTCTCCCACAGGATCACTCTTCAGAATCACCCCAGCTTGATACAGTCTTATTTAAGGATCATGATATTGATGATAAGCAACAGTCTCCACCATCGGCAGAACAAATTGACTTTGTCCCAGTCCAGCCTCTATCATCTCCACAATGTAACTTTTTCAGTGACTTAGGTTCTAATGGGACAAATTCTCTTGTGCTTCAGAAAGTATCAGGTAACCAGCAGATTGTAGGACAGCCTCAGATTGCGATTGCTGGACATGAGCAGGGGCTATTAGTTCAAGAGCCAGATGGACTCATGGTTGCAACTCCAGCCCAGACGCTTACCGACACTCTTGATGACCTGATAGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCTGGACATGAGCAGGGG
60.12
GCTGTGTCTCCTGTAGCTGT
59.39
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTGGACATGAGCAGGGGC
60.12
AGCTGTGTCTCCTGTAGCTG
59.11
140
PCR template sequence:
GCTGGACATGAGCAGGGGCTATTAGTTCAAGAGCCAGATGGACTCATGGTTGCAACTCCAGCCCAGACGCTTACCGACACTCTTGATGACCTGATAGCAGGTGCTAATGTGCATGCTACCACAGCTACAGGAGACACAGCTCTAACCTATGCTTGTGAAAATGGACATACAGATGTTGCAGATGTTCTACTTCAAGCAGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
16
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-23b-3p(1), mmu-miR-335-5p(1), mmu-miR-146a-5p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-148a-3p(1), mmu-miR-125b-5p(1), mmu-miR-23a-3p(1), mmu-miR-138-5p(1), mmu-miR-218-5p(1), mmu-miR-224-5p(1), mmu-miR-335-3p(1), mmu-miR-452-3p(1), mmu-miR-574-5p(1), mmu-miR-146b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GACCTGATAGCAGGTGCTAATGTGCA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKHD1_1332_ORF_1
1.1919
0.090083707
0.999999808
2520
ORF sequence:
ATGAAAGCTGCAAGAGCGGGTCATTTGTGCACTGTTCAGTTTCTTATTAGCAAAGGTGCCAATGTGAATAGGGCTACAGCCAATAATGATCACACAGTAGTGTCACTGGCATGTGCAGGAGGCCATTTGGCAGTGGTTGAACTGCTCTTGGCTCATGGAGCTGACCCTACTCATCGACTCAAGGATGGATCAACAATGCTTATTGAAGCTGCAAAAGGTGGCCATACTAATGTTGTTTCTTATCTGTTGGATTATCCAAATAATGTTCTGTCAGTTCCCACCACAGATGTATCTCAACTTACCTCTCCGTCACAAGATGAGTCTCAGGTTCCACGAGTACCCATACACACACTTGCCATGGTTGTGCCTCCCCAGGAACCTGACAGAACTTCCCAGGAGACATCTACTGCCCTTTTAGGAGTACAAAAAGGTGCATCCAAGCAGAAGTCCAGTTCTCTGCAGGTAGCAGATCAGGACCTACTGCCACCTTTTCACCCATACCAGCCTTTGGAGTGCATAGTAGAAGAGACTGAAGGCAAGCTGAATGAACTGGGGCAAAGAATTAGTGCTATTGAAAAAGCACAGCTTAAGTCATTGGAGTTAATTCAAGGTGAGCCTCTAAACAAGGATAAGATAGAAGAACTTAAAAAGAACAGAGAAGAGCAAGTCCAGAAGAAGAAGAAAATACTGAAAGAACTACAGAAGGTGGAAAGGCAGTTACAGATGAAAACACAGCAGCAATTTACCAAAGAATACTTGGAAACAAAAGGTCAGAGAGACACAGAGTCTCCACACCAGCAATGTTCTAATAGAGGAGTCTTCATGGCAGGGGAAGAAGATGGCAGTCTCCCACAGGATCACTCTTCAGAATCACCCCAGCTTGATACAGTCTTATTTAAGGATCATGATATTGATGATAAGCAACAGTCTCCACCATCGGCAGAACAAATTGACTTTGTCCCAGTCCAGCCTCTATCATCTCCACAATGTAACTTTTTCAGTGACTTAGGTTCTAATGGGACAAATTCTCTTGTGCTTCAGAAAGTATCAGGTAACCAGCAGATTGTAGGACAGCCTCAGATTGCGATTGCTGGACATGAGCAGGGGCTATTAGTTCAAGAGCCAGATGGACTCATGGTTGCAACTCCAGCCCAGACGCTTACCGACACTCTTGATGACCTGATAGCAGGTGCTAATGTGCATGCTACCACAGCTACAGGAGACACAGCTCTAACCTATGCTTGTGAAAATGGACATACAGATGTTGCAGATGTTCTACTTCAAGCAGGGGCCCATTTAGAACATGAATCTGAAGGTGGAAGAACACCTTTGATGAAAGCTGCAAGAGCGGGTCATTTGTGCACTGTTCAGTTTCTTATTAGCAAAGGTGCCAATGTGAATAGGGCTACAGCCAATAATGATCACACAGTAGTGTCACTGGCATGTGCAGGAGGCCATTTGGCAGTGGTTGAACTGCTCTTGGCTCATGGAGCTGACCCTACTCATCGACTCAAGGATGGATCAACAATGCTTATTGAAGCTGCAAAAGGTGGCCATACTAATGTTGTTTCTTATCTGTTGGATTATCCAAATAATGTTCTGTCAGTTCCCACCACAGATGTATCTCAACTTACCTCTCCGTCACAAGATGAGTCTCAGGTTCCACGAGTACCCATACACACACTTGCCATGGTTGTGCCTCCCCAGGAACCTGACAGAACTTCCCAGGAGACATCTACTGCCCTTTTAGGAGTACAAAAAGGTGCATCCAAGCAGAAGTCCAGTTCTCTGCAGGTAGCAGATCAGGACCTACTGCCACCTTTTCACCCATACCAGCCTTTGGAGTGCATAGTAGAAGAGACTGAAGGCAAGCTGAATGAACTGGGGCAAAGAATTAGTGCTATTGAAAAAGCACAGCTTAAGTCATTGGAGTTAATTCAAGGTGAGCCTCTAAACAAGGATAAGATAGAAGAACTTAAAAAGAACAGAGAAGAGCAAGTCCAGAAGAAGAAGAAAATACTGAAAGAACTACAGAAGGTGGAAAGGCAGTTACAGATGAAAACACAGCAGCAATTTACCAAAGAATACTTGGAAACAAAAGGTCAGAGAGACACAGAGTCTCCACACCAGCAATGTTCTAATAGAGGAGTCTTCATGGCAGGGGAAGAAGATGGCAGTCTCCCACAGGATCACTCTTCAGAATCACCCCAGCTTGATACAGTCTTATTTAAGGATCATGATATTGATGATAAGCAACAGTCTCCACCATCGGCAGAACAAATTGACTTTGTCCCAGTCCAGCCTCTATCATCTCCACAATGTAACTTTTTCAGTGACTTAGGTTCTAATGGGACAAATTCTCTTGTGCTTCAGAAAGTATCAGGTAACCAGCAGATTGTAGGACAGCCTCAGATTGCGATTGCTGGACATGAGCAGGGGCTATTAGTTCAAGAGCCAGATGGACTCATGGTTGCAACTCCAGCCCAGACGCTTACCGACACTCTTGATGACCTGATAGCA
Peptide sequence:
MKAARAGHLCTVQFLISKGANVNRATANNDHTVVSLACAGGHLAVVELLLAHGADPTHRLKDGSTMLIEAAKGGHTNVVSYLLDYPNNVLSVPTTDVSQLTSPSQDESQVPRVPIHTLAMVVPPQEPDRTSQETSTALLGVQKGASKQKSSSLQVADQDLLPPFHPYQPLECIVEETEGKLNELGQRISAIEKAQLKSLELIQGEPLNKDKIEELKKNREEQVQKKKKILKELQKVERQLQMKTQQQFTKEYLETKGQRDTESPHQQCSNRGVFMAGEEDGSLPQDHSSESPQLDTVLFKDHDIDDKQQSPPSAEQIDFVPVQPLSSPQCNFFSDLGSNGTNSLVLQKVSGNQQIVGQPQIAIAGHEQGLLVQEPDGLMVATPAQTLTDTLDDLIAGANVHATTATGDTALTYACENGHTDVADVLLQAGAHLEHESEGGRTPLMKAARAGHLCTVQFLISKGANVNRATANNDHTVVSLACAGGHLAVVELLLAHGADPTHRLKDGSTMLIEAAKGGHTNVVSYLLDYPNNVLSVPTTDVSQLTSPSQDESQVPRVPIHTLAMVVPPQEPDRTSQETSTALLGVQKGASKQKSSSLQVADQDLLPPFHPYQPLECIVEETEGKLNELGQRISAIEKAQLKSLELIQGEPLNKDKIEELKKNREEQVQKKKKILKELQKVERQLQMKTQQQFTKEYLETKGQRDTESPHQQCSNRGVFMAGEEDGSLPQDHSSESPQLDTVLFKDHDIDDKQQSPPSAEQIDFVPVQPLSSPQCNFFSDLGSNGTNSLVLQKVSGNQQIVGQPQIAIAGHEQGLLVQEPDGLMVATPAQTLTDTLDDLIA
IRESfinder result
IRESfinder score
0.648611464
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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