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mmu_circAnkfy1_1551
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkfy1_1551
mm39_Chr. Position ID:
chr11|72637681|72649426|+
Gene name:
Ankfy1
Transcript:
ENSMUST00000127610.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
10
Exon/intron indexes:
11,12,13,14,15,16,17,18,19,20
Exon/intron offsets:
0,2444,3224,3545,5209,6744,7481,8834,10437,11597
Genomic length:
11745
Exon/intron sizes in nt:
9,82,29,99,15,41,69,11,00,00,00,00,00,000
Flanking exon/introns:
chr11:72631427-72637681|chr11:72649426-72650741
Splice length:
1551
Other database IDs:
CIRCpedia: MMU_CIRCpedia_220499, circAtlas: mmu-Ankfy1_0046
Human Ortholog IDs:
Mature spliced Sequence:
GAAATTGTTTACTACAAAGGGCAGCTGGGGCTGGAAATGAGGCTGCTGCTCTCTTCCTGGCAACTAGTGGTGCCCATGCCAACCACAGGAACAAATGGGGAGAAACTCCTTTGCATACAGCTTGTCGGCATGGCCTGGCCAACCTCACAGCAGAGCTCCTGCAGCAAGGTGCCAATCCAAACTTACAGACAGAGGAGGCTCTGCCGGTACCTAAAGAGTCTCCCGTCCTAATGAGTTCTGCAGACAGCATCTACCTACAAACACCACTGCACATGGCAATTGCCTATAACCATCCAGATGTGGTTTCTGTCATCTTAGAGCAGAAAGCCAATGCTCTTCATGCCACCAACAACCTACAAATTATTCCAGACTTCAGCCTCAAGGATTCCAGAGACCAAACTGTTCTCGGCCTGGCATTATGGACTGGCATGCACACAATCGCTGCCCAGCTGCTGGGCTCCGGAGCCTCTATCAATGACACCATGTCAGATGGACAGACATTGCTGCACATGGCCATACAGCGGCAGGACAGCAAGAGCGCTCTCTTCCTACTGGAGCACCAAGCTGATATAAATGTCAGGACTCAGGACGGGGAGACTGCCCTCCAGCTGGCCATCAAACATCAGCTCCCACTAGTGGTTGATGCCATATGTACTCGAGGAGCTGACATGTCTGTGCCAGATGAAAAAGGGAACCCACCACTGTGGCTTGCCTTGGCAAGTAATCTGGAGGACATTGCTTCCACTCTGGTCAGACATGGTTGCGATGCTACATGCTGGGGCCCAGGACCCAGTGGGTGTCTTCAGACACTTCTGCATAGAGCCGTTGATGAAAACAATGAGTCTACTGCCTGCTTTCTTATTCGCAGTGGCTGTGACGTGAATAGTCCCAGACAACCAGGTACTAATGGAGAAGGAGAAGAGGAAGCAAGGGATGGACAGACTCCCCTGCATTTGGCAGCCTCATGGGGACTAGAAGAGACAGTACAGTGTCTTTTGGAGTTTGGTGCCAACGTCAATGCACAGGATGCAGAAGGGAGAACGCCTGTCCATGTGGCCATCAGCAACCAGCATAGCGTCATCATTCAGCTGTTGATCTCTCACCCCAACATTGAGTTGAGCGTCCGGGACAGACAAGGGCTGACTCCTTTTGCCTGTGCCATGACTTACAAGAACAATAAGGCAGCTGAAGCCATTTTAAAACGAGAGTCTGGGGCTGCTGAGCAGGTAGATAATAAAGGTCGGAATTTTCTCCATGTGGCAGTTCAGAACTCTGACATTGAAAGTGTCTTGTTCCTGATCAGTGTCCAGGCCAATGTGAACTCCAGAGTCCAGGATGCTTCCAAGTTGACCCCTCTGCACCTTGCTGTTCAGGCCGGCTCAGAGATCATTGTCCGAAATCTGCTTCTTGCAGGAGCCAAGGTGAATGAGTTAACCAAGCATCGTCAGACCGCTCTCCATCTCGCTGCACAGCAGGACCTGCCCACCATCTGCTCAGTCCTCCTAGAGAATGGAGTGGACTTCGCTGCTGTGGATGAGAATGGAAATAATG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACCATCTGCTCAGTCCTCCT
59.96
GCACCACTAGTTGCCAGGAA
60.25
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CACCATCTGCTCAGTCCTCC
59.82
GCACCACTAGTTGCCAGGAA
60.25
141
PCR template sequence:
GCTCTCCATCTCGCTGCACAGCAGGACCTGCCCACCATCTGCTCAGTCCTCCTAGAGAATGGAGTGGACTTCGCTGCTGTGGATGAGAATGGAAATAATGGAAATTGTTTACTACAAAGGGCAGCTGGGGCTGGAAATGAGGCTGCTGCTCTCTTCCTGGCAACTAGTGGTGCCCATGCCAACCACAGGAACAAATGGGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
17
Interacting miRNAs (#binding sites)
mmu-miR-136-5p(3), mmu-miR-211-5p(2), mmu-miR-204-5p(2), mmu-miR-22-3p(2), mmu-miR-23b-3p(1), mmu-miR-135a-5p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-33-5p(1), mmu-miR-23a-3p(1), mmu-miR-128-3p(1), mmu-miR-676-3p(1), mmu-miR-183-5p(1), mmu-miR-362-5p(1), mmu-miR-705(1), mmu-miR-207(1), mmu-miR-335-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AATGGAAATAATGGAAATTGTTTACT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKFY1_1551_ORF_1
1.1047
0.238360693
0.99999999
2871
ORF sequence:
ATGAGTTCTGCAGACAGCATCTACCTACAAACACCACTGCACATGGCAATTGCCTATAACCATCCAGATGTGGTTTCTGTCATCTTAGAGCAGAAAGCCAATGCTCTTCATGCCACCAACAACCTACAAATTATTCCAGACTTCAGCCTCAAGGATTCCAGAGACCAAACTGTTCTCGGCCTGGCATTATGGACTGGCATGCACACAATCGCTGCCCAGCTGCTGGGCTCCGGAGCCTCTATCAATGACACCATGTCAGATGGACAGACATTGCTGCACATGGCCATACAGCGGCAGGACAGCAAGAGCGCTCTCTTCCTACTGGAGCACCAAGCTGATATAAATGTCAGGACTCAGGACGGGGAGACTGCCCTCCAGCTGGCCATCAAACATCAGCTCCCACTAGTGGTTGATGCCATATGTACTCGAGGAGCTGACATGTCTGTGCCAGATGAAAAAGGGAACCCACCACTGTGGCTTGCCTTGGCAAGTAATCTGGAGGACATTGCTTCCACTCTGGTCAGACATGGTTGCGATGCTACATGCTGGGGCCCAGGACCCAGTGGGTGTCTTCAGACACTTCTGCATAGAGCCGTTGATGAAAACAATGAGTCTACTGCCTGCTTTCTTATTCGCAGTGGCTGTGACGTGAATAGTCCCAGACAACCAGGTACTAATGGAGAAGGAGAAGAGGAAGCAAGGGATGGACAGACTCCCCTGCATTTGGCAGCCTCATGGGGACTAGAAGAGACAGTACAGTGTCTTTTGGAGTTTGGTGCCAACGTCAATGCACAGGATGCAGAAGGGAGAACGCCTGTCCATGTGGCCATCAGCAACCAGCATAGCGTCATCATTCAGCTGTTGATCTCTCACCCCAACATTGAGTTGAGCGTCCGGGACAGACAAGGGCTGACTCCTTTTGCCTGTGCCATGACTTACAAGAACAATAAGGCAGCTGAAGCCATTTTAAAACGAGAGTCTGGGGCTGCTGAGCAGGTAGATAATAAAGGTCGGAATTTTCTCCATGTGGCAGTTCAGAACTCTGACATTGAAAGTGTCTTGTTCCTGATCAGTGTCCAGGCCAATGTGAACTCCAGAGTCCAGGATGCTTCCAAGTTGACCCCTCTGCACCTTGCTGTTCAGGCCGGCTCAGAGATCATTGTCCGAAATCTGCTTCTTGCAGGAGCCAAGGTGAATGAGTTAACCAAGCATCGTCAGACCGCTCTCCATCTCGCTGCACAGCAGGACCTGCCCACCATCTGCTCAGTCCTCCTAGAGAATGGAGTGGACTTCGCTGCTGTGGATGAGAATGGAAATAATGGAAATTGTTTACTACAAAGGGCAGCTGGGGCTGGAAATGAGGCTGCTGCTCTCTTCCTGGCAACTAGTGGTGCCCATGCCAACCACAGGAACAAATGGGGAGAAACTCCTTTGCATACAGCTTGTCGGCATGGCCTGGCCAACCTCACAGCAGAGCTCCTGCAGCAAGGTGCCAATCCAAACTTACAGACAGAGGAGGCTCTGCCGGTACCTAAAGAGTCTCCCGTCCTAATGAGTTCTGCAGACAGCATCTACCTACAAACACCACTGCACATGGCAATTGCCTATAACCATCCAGATGTGGTTTCTGTCATCTTAGAGCAGAAAGCCAATGCTCTTCATGCCACCAACAACCTACAAATTATTCCAGACTTCAGCCTCAAGGATTCCAGAGACCAAACTGTTCTCGGCCTGGCATTATGGACTGGCATGCACACAATCGCTGCCCAGCTGCTGGGCTCCGGAGCCTCTATCAATGACACCATGTCAGATGGACAGACATTGCTGCACATGGCCATACAGCGGCAGGACAGCAAGAGCGCTCTCTTCCTACTGGAGCACCAAGCTGATATAAATGTCAGGACTCAGGACGGGGAGACTGCCCTCCAGCTGGCCATCAAACATCAGCTCCCACTAGTGGTTGATGCCATATGTACTCGAGGAGCTGACATGTCTGTGCCAGATGAAAAAGGGAACCCACCACTGTGGCTTGCCTTGGCAAGTAATCTGGAGGACATTGCTTCCACTCTGGTCAGACATGGTTGCGATGCTACATGCTGGGGCCCAGGACCCAGTGGGTGTCTTCAGACACTTCTGCATAGAGCCGTTGATGAAAACAATGAGTCTACTGCCTGCTTTCTTATTCGCAGTGGCTGTGACGTGAATAGTCCCAGACAACCAGGTACTAATGGAGAAGGAGAAGAGGAAGCAAGGGATGGACAGACTCCCCTGCATTTGGCAGCCTCATGGGGACTAGAAGAGACAGTACAGTGTCTTTTGGAGTTTGGTGCCAACGTCAATGCACAGGATGCAGAAGGGAGAACGCCTGTCCATGTGGCCATCAGCAACCAGCATAGCGTCATCATTCAGCTGTTGATCTCTCACCCCAACATTGAGTTGAGCGTCCGGGACAGACAAGGGCTGACTCCTTTTGCCTGTGCCATGACTTACAAGAACAATAAGGCAGCTGAAGCCATTTTAAAACGAGAGTCTGGGGCTGCTGAGCAGGTAGATAATAAAGGTCGGAATTTTCTCCATGTGGCAGTTCAGAACTCTGACATTGAAAGTGTCTTGTTCCTGATCAGTGTCCAGGCCAATGTGAACTCCAGAGTCCAGGATGCTTCCAAGTTGACCCCTCTGCACCTTGCTGTTCAGGCCGGCTCAGAGATCATTGTCCGAAATCTGCTTCTTGCAGGAGCCAAGGTGAATGAGTTAACCAAGCATCGTCAGACCGCTCTCCATCTCGCTGCACAGCAGGACCTGCCCACCATCTGCTCAGTCCTCCTAGAGAATGGAGTGGACTTCGCTGCTGTGGATGAGAATGGAAATAAT
Peptide sequence:
MSSADSIYLQTPLHMAIAYNHPDVVSVILEQKANALHATNNLQIIPDFSLKDSRDQTVLGLALWTGMHTIAAQLLGSGASINDTMSDGQTLLHMAIQRQDSKSALFLLEHQADINVRTQDGETALQLAIKHQLPLVVDAICTRGADMSVPDEKGNPPLWLALASNLEDIASTLVRHGCDATCWGPGPSGCLQTLLHRAVDENNESTACFLIRSGCDVNSPRQPGTNGEGEEEARDGQTPLHLAASWGLEETVQCLLEFGANVNAQDAEGRTPVHVAISNQHSVIIQLLISHPNIELSVRDRQGLTPFACAMTYKNNKAAEAILKRESGAAEQVDNKGRNFLHVAVQNSDIESVLFLISVQANVNSRVQDASKLTPLHLAVQAGSEIIVRNLLLAGAKVNELTKHRQTALHLAAQQDLPTICSVLLENGVDFAAVDENGNNGNCLLQRAAGAGNEAAALFLATSGAHANHRNKWGETPLHTACRHGLANLTAELLQQGANPNLQTEEALPVPKESPVLMSSADSIYLQTPLHMAIAYNHPDVVSVILEQKANALHATNNLQIIPDFSLKDSRDQTVLGLALWTGMHTIAAQLLGSGASINDTMSDGQTLLHMAIQRQDSKSALFLLEHQADINVRTQDGETALQLAIKHQLPLVVDAICTRGADMSVPDEKGNPPLWLALASNLEDIASTLVRHGCDATCWGPGPSGCLQTLLHRAVDENNESTACFLIRSGCDVNSPRQPGTNGEGEEEARDGQTPLHLAASWGLEETVQCLLEFGANVNAQDAEGRTPVHVAISNQHSVIIQLLISHPNIELSVRDRQGLTPFACAMTYKNNKAAEAILKRESGAAEQVDNKGRNFLHVAVQNSDIESVLFLISVQANVNSRVQDASKLTPLHLAVQAGSEIIVRNLLLAGAKVNELTKHRQTALHLAAQQDLPTICSVLLENGVDFAAVDENGNN
IRESfinder result
IRESfinder score
0.448755606
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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