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mmu_circAnk2_693_2
Basic information of circular RNA
PanCircBase ID:
mmu_circAnk2_693_2
mm39_Chr. Position ID:
chr3|126822867|126841929|-
Gene name:
Ank2
Transcript:
ENSMUST00000182078.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
14,13,12,11,10,9
Exon/intron offsets:
0,256,2897,9528,17506,18963
Genomic length:
19062
Exon/intron sizes in nt:
99,99,198,99,99,99
Flanking exon/introns:
chr3:126817039-126822867|chr3:126841929-126845874
Splice length:
693
Other database IDs:
circAtlas: hsa-ANK2_0013
Human Ortholog IDs:
Mature spliced Sequence:
AGTGGCTTCACTCCTTTGCACATAGCTGCACACTATGGGAATGTAAATGTGGCAACTCTTCTTCTAAACCGGGGAGCTGCTGTGGACTTCACCGCCAGGAATGGAATCACTCCTCTGCACGTGGCTTCCAAACGAGGAAATACCAACATGGTGAAGCTTCTACTGGATCGAGGTGGTCAGATTGATGCCAAAACTAGGGACGGGCTGACACCACTTCACTGTGCTGCGCGGAGTGGGCATGATCAAGTGGTGGAGCTGCTGTTGGAACGGAAGGCTCCCTTGCTGGCGAGGACCAAGAATGGGCTGTCCCCGCTTCACATGGCTGCGCAGGGGGACCACGTGGAATGTGTGAAGCACCTGCTCCAATACAAGGCGCCTGTCGATGACGTCACCCTGGATTACCTGACGGCTCTTCATGTTGCTGCACACTGTGGGCACTACCGTGTAACCAAACTCCTGCTGGACAAGAGAGCCAACCCGAACGCAAGAGCCCTGAATGGTTTTACTCCACTGCACATTGCCTGCAAGAAAAACCGCATCAAAGTCATGGAACTGCTGGTGAAATATGGGGCTTCAATCCAAGCTATAACAGAGTCTGGCCTCACACCAATACATGTGGCTGCCTTCATGGGCCACTTGAACATTGTCCTCCTTCTGCTGCAGAACGGAGCCTCTCCAGATGTCACTAACATT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTGTCCTCCTTCTGCTGCAG
59.96
GTGAAGTCCACAGCAGCTCC
60.95
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACCAATACATGTGGCTGCCT
59.67
GCAGCTCCCCGGTTTAGAAG
60.74
168
PCR template sequence:
GTCTGGCCTCACACCAATACATGTGGCTGCCTTCATGGGCCACTTGAACATTGTCCTCCTTCTGCTGCAGAACGGAGCCTCTCCAGATGTCACTAACATTAGTGGCTTCACTCCTTTGCACATAGCTGCACACTATGGGAATGTAAATGTGGCAACTCTTCTTCTAAACCGGGGAGCTGCTGTGGACTTCACCGCCAGGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-298-5p(1), mmu-miR-128-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TGTCACTAACATTAGTGGCTTCACTC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANK2_693_2_ORF_1
1.176
0.314968201
0.999208066
1239
ORF sequence:
ATGGTGAAGCTTCTACTGGATCGAGGTGGTCAGATTGATGCCAAAACTAGGGACGGGCTGACACCACTTCACTGTGCTGCGCGGAGTGGGCATGATCAAGTGGTGGAGCTGCTGTTGGAACGGAAGGCTCCCTTGCTGGCGAGGACCAAGAATGGGCTGTCCCCGCTTCACATGGCTGCGCAGGGGGACCACGTGGAATGTGTGAAGCACCTGCTCCAATACAAGGCGCCTGTCGATGACGTCACCCTGGATTACCTGACGGCTCTTCATGTTGCTGCACACTGTGGGCACTACCGTGTAACCAAACTCCTGCTGGACAAGAGAGCCAACCCGAACGCAAGAGCCCTGAATGGTTTTACTCCACTGCACATTGCCTGCAAGAAAAACCGCATCAAAGTCATGGAACTGCTGGTGAAATATGGGGCTTCAATCCAAGCTATAACAGAGTCTGGCCTCACACCAATACATGTGGCTGCCTTCATGGGCCACTTGAACATTGTCCTCCTTCTGCTGCAGAACGGAGCCTCTCCAGATGTCACTAACATTAGTGGCTTCACTCCTTTGCACATAGCTGCACACTATGGGAATGTAAATGTGGCAACTCTTCTTCTAAACCGGGGAGCTGCTGTGGACTTCACCGCCAGGAATGGAATCACTCCTCTGCACGTGGCTTCCAAACGAGGAAATACCAACATGGTGAAGCTTCTACTGGATCGAGGTGGTCAGATTGATGCCAAAACTAGGGACGGGCTGACACCACTTCACTGTGCTGCGCGGAGTGGGCATGATCAAGTGGTGGAGCTGCTGTTGGAACGGAAGGCTCCCTTGCTGGCGAGGACCAAGAATGGGCTGTCCCCGCTTCACATGGCTGCGCAGGGGGACCACGTGGAATGTGTGAAGCACCTGCTCCAATACAAGGCGCCTGTCGATGACGTCACCCTGGATTACCTGACGGCTCTTCATGTTGCTGCACACTGTGGGCACTACCGTGTAACCAAACTCCTGCTGGACAAGAGAGCCAACCCGAACGCAAGAGCCCTGAATGGTTTTACTCCACTGCACATTGCCTGCAAGAAAAACCGCATCAAAGTCATGGAACTGCTGGTGAAATATGGGGCTTCAATCCAAGCTATAACAGAGTCTGGCCTCACACCAATACATGTGGCTGCCTTCATGGGCCACTTGAACATTGTCCTCCTTCTGCTGCAGAACGGAGCCTCTCCAGATGTCACTAACATT
Peptide sequence:
MVKLLLDRGGQIDAKTRDGLTPLHCAARSGHDQVVELLLERKAPLLARTKNGLSPLHMAAQGDHVECVKHLLQYKAPVDDVTLDYLTALHVAAHCGHYRVTKLLLDKRANPNARALNGFTPLHIACKKNRIKVMELLVKYGASIQAITESGLTPIHVAAFMGHLNIVLLLLQNGASPDVTNISGFTPLHIAAHYGNVNVATLLLNRGAAVDFTARNGITPLHVASKRGNTNMVKLLLDRGGQIDAKTRDGLTPLHCAARSGHDQVVELLLERKAPLLARTKNGLSPLHMAAQGDHVECVKHLLQYKAPVDDVTLDYLTALHVAAHCGHYRVTKLLLDKRANPNARALNGFTPLHIACKKNRIKVMELLVKYGASIQAITESGLTPIHVAAFMGHLNIVLLLLQNGASPDVTNI
IRESfinder result
IRESfinder score
0.378874814
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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