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mmu_circAnk2_201
Basic information of circular RNA
PanCircBase ID:
mmu_circAnk2_201
mm39_Chr. Position ID:
chr3|126898409|127041881|-
Gene name:
Ank2
Transcript:
ENSMUST00000182008.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
4,3
Exon/intron offsets:
0,143373
Genomic length:
143472
Exon/intron sizes in nt:
102,99
Flanking exon/introns:
chr3:126873645-126898409|chr3:127041881-127132780
Splice length:
201
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
AGCCAAAACAAGTGTGAGAGCCAAACTACATGCAATGAAGTCACACAATCAAGCTGCATCCAACGCAAGGACCCCAATGGTGTGCATCCCGATGACCAGTCTGACAGCAATGCCAGCTTCCTCCGCGCTGCCAGAGCAGGCAACCTGGACAAAGTGGTGGAATATCTGAAAGGGGGCATTGACATCAATACCTGCAATCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCAACCTGGACAAAGTGGTG
59.61
TCATCGGGATGCACACCATT
59.74
157
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGGCAACCTGGACAAAGTGG
60.47
TCATCGGGATGCACACCATT
59.74
159
PCR template sequence:
TGACAGCAATGCCAGCTTCCTCCGCGCTGCCAGAGCAGGCAACCTGGACAAAGTGGTGGAATATCTGAAAGGGGGCATTGACATCAATACCTGCAATCAGAGCCAAAACAAGTGTGAGAGCCAAACTACATGCAATGAAGTCACACAATCAAGCTGCATCCAACGCAAGGACCCCAATGGTGTGCATCCCGATGACCAGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
TACCTGCAATCAGAGCCAAAACAAGT
siRNA sets
TGTTTTGGCTCTGATTGCA,TTTTGGCTCTGATTGCAGG,TTGTTTTGGCTCTGATTGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.179511599
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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